Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060361.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80836-7|AAB37893.3|  451|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    28   7.1  
Z69717-2|CAA93532.2|  204|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical pr...    27   9.4  
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p...    27   9.4  

>U80836-7|AAB37893.3|  451|Caenorhabditis elegans Hypothetical
           protein B0432.13 protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 492 SCHRTGARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRL 617
           SC RT  + GFV ++F  V+++  E A  PP  +  ++ Y+L
Sbjct: 52  SCRRTVPKNGFVEKLFFDVQRMGGE-AEKPPEIDYREEHYKL 92


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 158  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 250
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 158  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 250
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 158  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 250
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>Z69717-2|CAA93532.2|  204|Caenorhabditis elegans Hypothetical
           protein E01G6.2 protein.
          Length = 204

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 80  NKRIQFEKGIKMQGPAVFMDISLEDQALELRRYFKSLGAE 199
           NK+ +  K  K  G ++ MD+ LED+A  L    ++ G E
Sbjct: 62  NKKTKVSKNGKDFGKSMSMDVLLEDEAAALVEALETFGDE 101


>Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical
           protein C40H1.9 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 589 LEGGQLANSFLSCSTPVKTSLTNPTRAPV 503
           +E  Q  +SF+SCST +   L  PT+  V
Sbjct: 37  VEQSQCNSSFVSCSTKISLQLNCPTKPKV 65


>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
            protein C14B9.8 protein.
          Length = 1226

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 528  REVFTGVEQLRKEFANCPPSNEQMQKLYRLLHXVLKXQNSELAAKVMIELLG 683
            +++  G+   ++E   CP +NE+++K+    +      NS   A+ +I  LG
Sbjct: 873  KQITVGIASKKEEVITCPKTNEELEKIMNRAYG--DDANSFTLAQEIIVYLG 922


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,261
Number of Sequences: 27780
Number of extensions: 260772
Number of successful extensions: 781
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)