Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060361.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li...    30   1.6  
At1g08250.1 68414.m00910 prephenate dehydratase family protein c...    30   1.6  
At2g27820.1 68415.m03373 prephenate dehydratase family protein         29   2.9  
At1g76850.1 68414.m08943 expressed protein                             29   2.9  
At1g18920.1 68414.m02355 hypothetical protein contains Pfam prof...    28   5.0  
At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put...    28   6.6  
At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong...    28   6.6  

>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 114 CKGQLCLW--TYPWKIRHSN*EDIL 182
           C   LCLW  + P KIRHSN E IL
Sbjct: 519 CDFNLCLWCASLPKKIRHSNDEHIL 543


>At1g08250.1 68414.m00910 prephenate dehydratase family protein
           contains similarity to prephenate dehydratase GI:1008717
           from [Amycolatopsis methanolica]
          Length = 413

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 158 ALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGFVMLVSKSRVNRISKPF*T 313
           A+   R  +  G EI E+    GI+DD+  +  FVML  +  + R  +PF T
Sbjct: 260 AIASARAAEIYGLEILED----GIQDDVSNVTRFVMLAREPIIPRTDRPFKT 307


>At2g27820.1 68415.m03373 prephenate dehydratase family protein
          Length = 424

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 158 ALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGFVMLVSKSRVNRISKPF*T 313
           A+   R  +  G EI E+    GI+DD   +  FVML  +  + R  +PF T
Sbjct: 265 AIASARAAEIYGLEILED----GIQDDASNVTRFVMLAREPIIPRTDRPFKT 312


>At1g76850.1 68414.m08943 expressed protein
          Length = 1090

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 307 LNSIVSIMVSIPLERGENLILAFSQRLTKA-PGPKLGMVALQSLWRLYNNLEPNSPLRYH 483
           L S V+I+  + LE  E ++L F   L K+   PK+   +L++  RL   LEP S   +H
Sbjct: 380 LPSHVNILKRV-LEEVEKVMLEFKGTLYKSMEDPKIDFTSLENTVRLLLELEPESDPVWH 438


>At1g18920.1 68414.m02355 hypothetical protein contains Pfam profile
           PF03794: Domain of Unknown function
          Length = 980

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
 Frame = +1

Query: 262 DACFKE--PSESDIEAILNSIV------SIMVSIPLERGENLILAFSQRLTKAPGPKLGM 417
           + CFKE  P+E  ++ ++NS +      S+     + +G   +   S+ +T +       
Sbjct: 223 ETCFKEVVPNELSLQLVINSWLIDDSQSSLTALTKIMKGVQSV-EVSENMTNSQTNSSSS 281

Query: 418 VALQSLWRLYNNLEPNSPLRYHVYYHVIELVH 513
              Q  W+    +  +SP   H+  H I L H
Sbjct: 282 GVFQRFWQWSKKMSFSSPNTGHILVHGIHLWH 313


>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
           putative / extra sporogenous cells (ESP) identical to
           extra sporogenous cells [Arabidopsis thaliana]
           gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1192

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +1

Query: 337 IPLERGE-----NLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVYYHVI 501
           IP+E G+      L L  +    + P     +  LQ L   YNNL  + P +   Y+H I
Sbjct: 512 IPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQI 571

Query: 502 EL 507
           E+
Sbjct: 572 EM 573


>At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong
           similarity to SP|P51846 Pyruvate decarboxylase isozyme 2
           (EC 4.1.1.1) (PDC) {Nicotiana tabacum}; contains
           InterPro entry IPR000399: Pyruvate decarboxylase
          Length = 607

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +1

Query: 304 ILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYH 483
           I N   S+  S+ L++ E  I+    R+T A GP  G + +   +R  +     +   Y 
Sbjct: 330 IFNDYSSVGYSLLLKK-EKAIVVQPDRITVANGPTFGCILMSDFFRELSKRVKRNETAYE 388

Query: 484 VYYHV 498
            Y+ +
Sbjct: 389 NYHRI 393


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,935,694
Number of Sequences: 28952
Number of extensions: 243967
Number of successful extensions: 734
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)