Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060360.seq
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...   102   4e-23
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    87   3e-18
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    27   1.9  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    26   4.5  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   4.5  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    26   5.9  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   5.9  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.9  

>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score =  102 bits (245), Expect = 4e-23
 Identities = 42/80 (52%), Positives = 61/80 (76%)
 Frame = +2

Query: 245 RKEVTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLL 424
           ++++TE+ NE HENVKYLPG + P NV+AVPDV E A+ AD+L+FVVPHQF+  +C  ++
Sbjct: 71  KRKLTEVFNEAHENVKYLPGIECPPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMV 130

Query: 425 GKIKPTAAALSLIKGFDIAE 484
           G I+P A  +S IKG  +++
Sbjct: 131 GLIRPGAVGISCIKGVAVSK 150



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
 Frame = +3

Query: 108 QPKNKVCI--VGSGNWGSAIAKIVGRNA-ASLSNFEDRVTMWVYEEIIE 245
           +PK ++ I  VGSGNWG+AIAKI G NA A   +F  +V MWV+EE IE
Sbjct: 18  RPKKRLSIGVVGSGNWGTAIAKICGENARAHGHHFRSKVRMWVFEEEIE 66



 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 20/42 (47%), Positives = 28/42 (66%)
 Frame = +1

Query: 484 RAGIDLISLLLQDA*KFPVAVLMGANIASEVAEEKFCETTIG 609
           + G+ L S ++ +       VL GAN+A+EVA E+FCETTIG
Sbjct: 150 KEGVRLYSEVISEKLGIYCGVLSGANVANEVAREQFCETTIG 191


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 86.6 bits (205), Expect = 3e-18
 Identities = 39/77 (50%), Positives = 53/77 (68%)
 Frame = +2

Query: 254 VTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKI 433
           +TE+ N THENVKYL G K PSNV A PD+ +    +D+L++V+PHQFV  IC+ L G +
Sbjct: 76  LTEVFNTTHENVKYLKGIKCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKGCL 135

Query: 434 KPTAAALSLIKGFDIAE 484
           K  A A+S IKG  + +
Sbjct: 136 KKDAVAISCIKGVSVTK 152



 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 25/42 (59%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = +3

Query: 123 VCIVGSGNWGSAIAKIVGRNA-ASLSNFEDRVTMWVYEEIIE 245
           V I+GSGNWG+AIAKI G NA A    F  +V MW+YEE I+
Sbjct: 27  VGIIGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQ 68



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 22/39 (56%), Positives = 28/39 (71%)
 Frame = +1

Query: 493 IDLISLLLQDA*KFPVAVLMGANIASEVAEEKFCETTIG 609
           + L S ++++       VL GANIASEVA+EKFCETTIG
Sbjct: 155 VRLFSDIIEENTGMYCGVLSGANIASEVAQEKFCETTIG 193


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 392 QFVRTICSTLLGKIKPTAAALSLIKGFDIAEGLASI 499
           + +R IC T+ G ++ +   + L KGF++ E + ++
Sbjct: 315 ELIRFICLTINGNLQISGQTVDLEKGFEVIEFIPAL 350


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 428 KIKPTAAALSLIK----GFDIAEGLASILYHYYYKMPKNSLWLY 547
           K+ P + A +LI     GF +   L  ++Y Y+Y+M     W+Y
Sbjct: 39  KVIPMSMAPNLITLIGLGFVVINILTMLVYKYHYEMDAFPSWVY 82


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 644  PALTEPSITSRQPMVVSQNFSSATSDAILAPINT 543
            P    P +  R   + S + SSATS A++ PI+T
Sbjct: 1228 PERLRPRVKQRFMKIRSPSVSSATSVALMIPIST 1261


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = +2

Query: 293 YLPGHKLPSNVVAVPDVVEA-AKDADLLIFVVPH----QFVR---TICSTLLGKIKPTAA 448
           Y+PG +    V AV D VEA  K  D ++++ P     Q+     T+ S +  KI    A
Sbjct: 59  YIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKIA 118

Query: 449 ALSLIKG 469
           + +L++G
Sbjct: 119 SAALLQG 125


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 583 EKFCETTIGCRDVMLGSVNAGYH 651
           + FC  T   R+V +G++ + YH
Sbjct: 289 QNFCSNTAASRNVFIGNLPSSYH 311


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 365 DLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGLASILYHYYYKMPKN 532
           DL    V H F+     T + K     A L   + FDIAE + +++  Y +K  K+
Sbjct: 48  DLGTLSVGHYFLSLALQTFVPKDSVRYAHLPYAQAFDIAE-IVNLIREYSHKYHKH 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,532
Number of Sequences: 5004
Number of extensions: 50325
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)