Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060360.seq
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 97 9e-21
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 50 1e-06
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 34 0.093
08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675 32 0.49
06_03_0298 - 19272257-19273714 29 3.5
01_02_0085 - 10967407-10968291,10970481-10970957 29 3.5
08_02_0444 - 17209447-17209491,17210559-17210849,17211655-172116... 29 4.6
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 28 6.1
04_01_0385 - 5095410-5095445,5095595-5095796,5095905-5095979,509... 28 6.1
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 28 6.1
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 28 6.1
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 97.5 bits (232), Expect = 9e-21
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = +2
Query: 248 KEVTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 427
K+++E IN+ +EN KYLPG KL +NV+A PD+ A KDA++L+FV PHQFV IC L+G
Sbjct: 53 KKLSESINQANENCKYLPGIKLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVG 112
Query: 428 KIKPTAAALSLIKGFDIA 481
K++P +SLIKG +IA
Sbjct: 113 KLRPGTEGISLIKGMEIA 130
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = +3
Query: 96 MADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEII 242
M + KN V ++GSGNWGS ++++ N A L +F D V MWV+EEI+
Sbjct: 1 MENGHAKNLVAVIGSGNWGSVASRLIASNTAKLPSFHDEVRMWVFEEIL 49
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = +2
Query: 254 VTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKI 433
V IN +H N KYL H+LP N+ A +A AD VP QF + + +
Sbjct: 144 VCRSINHSHINCKYLRDHRLPENITATTSASDALAGADFCFHAVPVQFSSSFLEGISTHV 203
Query: 434 KPTAAALSLIKGFDI 478
P +SL KG ++
Sbjct: 204 DPKLPFISLSKGLEL 218
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 34.3 bits (75), Expect = 0.093
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 78 DCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAAS 191
DC +L MAD ++G W S +A+ VG A S
Sbjct: 152 DCTVLTMADDSTIKAKVVIGCDGWNSVVARYVGLGAPS 189
>08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675
Length = 264
Score = 31.9 bits (69), Expect = 0.49
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -3
Query: 613 DNQWSFRRIFPQQPPMQYWLPL 548
D++W R+F +QPP+++WL +
Sbjct: 93 DSEWVICRVFKKQPPIEHWLEM 114
>06_03_0298 - 19272257-19273714
Length = 485
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 114 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTM---WVYE 233
K KVC+VG G G A A+ + R +S E R + W+Y+
Sbjct: 2 KKKVCVVGGGLVGLAAARELQREGHDVSVLEQRGGVGGQWLYD 44
>01_02_0085 - 10967407-10968291,10970481-10970957
Length = 453
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 628 PALRPDNQWSFRRIFPQQPPMQYWLPLIQPQGIFRHLVIIVI 503
P + D + +FR F M WLP P IFR L+ + +
Sbjct: 183 PLVFHDGRLAFRPTFQATLAMLTWLPFSLPLTIFRTLIFVTL 224
>08_02_0444 -
17209447-17209491,17210559-17210849,17211655-17211672,
17211798-17211969,17212523-17212630,17212940-17213382
Length = 358
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 516 TRCLKIPCGCINGSQYCIG 572
++CLK+ C C +YCIG
Sbjct: 179 SKCLKLYCECFEKGRYCIG 197
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 516 TRCLKIPCGCINGSQYCIGGC 578
+RCLK+ C C G YC C
Sbjct: 93 SRCLKLYCPCFAGGGYCSEKC 113
>04_01_0385 -
5095410-5095445,5095595-5095796,5095905-5095979,
5096460-5096484,5097032-5097137
Length = 147
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 492 HRSYITIITRCLKIPCGCINGSQYCIGGC 578
HRS + + C+K+ C C + YC C
Sbjct: 56 HRSCRCVKSNCVKLYCPCFSAYGYCSQNC 84
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 516 TRCLKIPCGCINGSQYCIGGC*GKILRNDH 605
++CLK+ C C YC C + NDH
Sbjct: 469 SKCLKLYCECFASKVYCSESCSCRGCFNDH 498
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 93 DMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFE---DRVTMWVYEE 236
D+ + KVC++G+G G A A+ + R +++ E D W+Y++
Sbjct: 7 DVGKPRASRKVCVIGAGMAGLAAARELRREGHAVTVLEQAGDVGGQWLYDD 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,575,634
Number of Sequences: 37544
Number of extensions: 317693
Number of successful extensions: 870
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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