Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060360.seq
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)              71   1e-12
SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_22212| Best HMM Match : AmoA (HMM E-Value=0.6)                      29   2.7  
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)                    28   8.2  

>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
          Length = 358

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 31/48 (64%), Positives = 37/48 (77%)
 Frame = +2

Query: 251 EVTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQ 394
           ++TEIIN  H NVKYLP   +P N+ A PDVVE  KDAD+L+FVVPHQ
Sbjct: 53  KLTEIINTKHMNVKYLPDFLIPENIHANPDVVECVKDADILVFVVPHQ 100



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/49 (44%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
 Frame = +3

Query: 105 KQPKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEG 248
           ++ + +V I+GSGNWGS IA+IVG+N    ++ F + V M+ YEE+++G
Sbjct: 3   EEGRKRVAIIGSGNWGSVIARIVGQNVKEHNDVFFEGVEMYTYEELVDG 51



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
 Frame = +1

Query: 484 RAGIDLISLLLQDA*KFP-VAVLMGANIASEVAEEKFCETTIG 609
           + G+ L+S ++++A   P V+VLMGAN+A EVA E F E TIG
Sbjct: 106 KTGLTLVSNVIKEALDLPEVSVLMGANLAKEVARELFGEATIG 148


>SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = +3

Query: 120 KVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEG 248
           KV ++GSGNWG+AIA+I+G N     + F ++V M+VY+ +I G
Sbjct: 229 KVTVLGSGNWGTAIARIIGDNVRKKPHLFHNKVQMYVYDSLING 272



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 28/76 (36%), Positives = 38/76 (50%)
 Frame = +2

Query: 248 KEVTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 427
           ++++EIIN  HENVK LPG K+P NV                       F+ ++C  +  
Sbjct: 273 RKLSEIINTEHENVKDLPGFKIPPNV-----------------------FLDSVCQKIKS 309

Query: 428 KIKPTAAALSLIKGFD 475
            IKP   A+SLIKG D
Sbjct: 310 SIKPDVLAISLIKGLD 325



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = +1

Query: 481 RRAGIDLISLLLQDA*KFP-VAVLMGANIASEVAEEKFCETTIGCR 615
           R+ G+ L+S  ++++     V+V+MGAN+A EVA+  F ETTIG R
Sbjct: 327 RKKGLHLVSNQIKESLGLQHVSVMMGANLADEVAKGFFSETTIGSR 372


>SB_22212| Best HMM Match : AmoA (HMM E-Value=0.6)
          Length = 772

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 290 KYLPGHKLPSNVVAVPDVVEAAKDAD-LLIFVVPHQFVRTICSTLLGKIKPTAAALSLIK 466
           + L G+  P   +  P+VV+ +  A  L+I VVP     T    L G   P AA +   +
Sbjct: 200 RQLNGNDAPMAALVGPEVVDVSVGAAALMIRVVPKFSTATFTRQLNGNDAPIAALVGP-E 258

Query: 467 GFDIAEGLASILYHYY 514
             D++ G AS++   Y
Sbjct: 259 VVDVSVGAASLMIRPY 274



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 290 KYLPGHKLPSNVVAVPDVVEAAKDA-DLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIK 466
           + L G+  P   +  P+VV+ +  A  L+I VVP     T    L G   P AA +   +
Sbjct: 523 RQLNGNDAPMAALVGPEVVDVSVGAASLMIRVVPKFSTATFTRQLNGNDAPIAALVGP-E 581

Query: 467 GFDIAEGLASIL 502
             D++ G AS++
Sbjct: 582 VVDVSVGAASLM 593



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 290 KYLPGHKLPSNVVAVPDVVEAAKDAD-LLIFVVPHQFVRTICSTLLGKIKPTAAALSLIK 466
           + L G+  P   +  P+VV+ +  A  L+I VVP     T    L G   P AA +   +
Sbjct: 481 RQLNGNDAPMAALVGPEVVDVSVGAAALMIRVVPKFSTATFTRQLNGNDAPMAALVGP-E 539

Query: 467 GFDIAEGLASIL 502
             D++ G AS++
Sbjct: 540 VVDVSVGAASLM 551


>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
          Length = 2057

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 486 GWHRSYITIITRCLK 530
           GWH+ ++TI  RCLK
Sbjct: 792 GWHKRWMTITDRCLK 806


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,096,993
Number of Sequences: 59808
Number of extensions: 362093
Number of successful extensions: 854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)