Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060360.seq
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22180-10|CAO82052.1|  360|Caenorhabditis elegans Hypothetical p...    97   1e-20
Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical pr...    97   1e-20
Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical pr...    97   1e-20
Z99171-3|CAB16310.1|  374|Caenorhabditis elegans Hypothetical pr...    83   1e-16
Z22180-9|CAO82051.1|  304|Caenorhabditis elegans Hypothetical pr...    58   8e-09

>Z22180-10|CAO82052.1|  360|Caenorhabditis elegans Hypothetical
           protein K11H3.1d protein.
          Length = 360

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 42/74 (56%), Positives = 59/74 (79%)
 Frame = +2

Query: 248 KEVTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 427
           ++++E+IN  HEN+KYLPG  LP+NVVAV D+VE+ + +++L+FVVPHQFV+ IC  L+G
Sbjct: 49  EKLSEVINNRHENIKYLPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICEKLVG 108

Query: 428 KIKPTAAALSLIKG 469
           KI     A+SLIKG
Sbjct: 109 KIPADTQAISLIKG 122



 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 28/47 (59%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +3

Query: 111 PKNKVCIVGSGNWGSAIAKIVGRNAASL-SNFEDRVTMWVYEEIIEG 248
           PK KV I+GSGNWGSAIA+IVG    S    F+  V MWV+EEI+ G
Sbjct: 3   PK-KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNG 48



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 25/50 (50%), Positives = 35/50 (70%)
 Frame = +1

Query: 466 GI*YSRRAGIDLISLLLQDA*KFPVAVLMGANIASEVAEEKFCETTIGCR 615
           G+   +R G+ LIS  +++  K  V+VLMGAN+A EVA + FCE TIGC+
Sbjct: 131 GVSTEKRGGLKLISEEIKEILKIEVSVLMGANLAPEVANDNFCEATIGCK 180


>Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical
           protein K11H3.1b protein.
          Length = 392

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 42/74 (56%), Positives = 59/74 (79%)
 Frame = +2

Query: 248 KEVTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 427
           ++++E+IN  HEN+KYLPG  LP+NVVAV D+VE+ + +++L+FVVPHQFV+ IC  L+G
Sbjct: 81  EKLSEVINNRHENIKYLPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICEKLVG 140

Query: 428 KIKPTAAALSLIKG 469
           KI     A+SLIKG
Sbjct: 141 KIPADTQAISLIKG 154



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = +3

Query: 60  FKYFVRDCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASL-SNFEDRVTMWVYEE 236
           F+YF     I  M+ K    KV I+GSGNWGSAIA+IVG    S    F+  V MWV+EE
Sbjct: 21  FRYFGTTSTIATMSPK----KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEE 76

Query: 237 IIEG 248
           I+ G
Sbjct: 77  IVNG 80



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 25/50 (50%), Positives = 35/50 (70%)
 Frame = +1

Query: 466 GI*YSRRAGIDLISLLLQDA*KFPVAVLMGANIASEVAEEKFCETTIGCR 615
           G+   +R G+ LIS  +++  K  V+VLMGAN+A EVA + FCE TIGC+
Sbjct: 163 GVSTEKRGGLKLISEEIKEILKIEVSVLMGANLAPEVANDNFCEATIGCK 212


>Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical
           protein K11H3.1a protein.
          Length = 371

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 42/74 (56%), Positives = 59/74 (79%)
 Frame = +2

Query: 248 KEVTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 427
           ++++E+IN  HEN+KYLPG  LP+NVVAV D+VE+ + +++L+FVVPHQFV+ IC  L+G
Sbjct: 69  EKLSEVINNRHENIKYLPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICEKLVG 128

Query: 428 KIKPTAAALSLIKG 469
           KI     A+SLIKG
Sbjct: 129 KIPADTQAISLIKG 142



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = +3

Query: 60  FKYFVRDCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASL-SNFEDRVTMWVYEE 236
           F+YF     I  M+ K    KV I+GSGNWGSAIA+IVG    S    F+  V MWV+EE
Sbjct: 9   FRYFGTTSTIATMSPK----KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEE 64

Query: 237 IIEG 248
           I+ G
Sbjct: 65  IVNG 68



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 25/50 (50%), Positives = 35/50 (70%)
 Frame = +1

Query: 466 GI*YSRRAGIDLISLLLQDA*KFPVAVLMGANIASEVAEEKFCETTIGCR 615
           G+   +R G+ LIS  +++  K  V+VLMGAN+A EVA + FCE TIGC+
Sbjct: 142 GVSTEKRGGLKLISEEIKEILKIEVSVLMGANLAPEVANDNFCEATIGCK 191


>Z99171-3|CAB16310.1|  374|Caenorhabditis elegans Hypothetical
           protein F47G4.3 protein.
          Length = 374

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 38/72 (52%), Positives = 49/72 (68%)
 Frame = +2

Query: 254 VTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKI 433
           + E IN THEN KYLPG ++P NVVA   ++EA + A +LI VVPHQ +  IC  L GK+
Sbjct: 72  IAETINSTHENPKYLPGRRIPDNVVATSSLLEACQSAHILILVVPHQGIPQICDELRGKL 131

Query: 434 KPTAAALSLIKG 469
           +  A A+SL KG
Sbjct: 132 QKGAHAISLTKG 143



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/46 (50%), Positives = 31/46 (67%)
 Frame = +1

Query: 493 IDLISLLLQDA*KFPVAVLMGANIASEVAEEKFCETTIGCRDVMLG 630
           + LIS  ++ A     +VLMGAN+A EVA+ KFCE TIGC+ +  G
Sbjct: 155 MQLISEDIERALGVQCSVLMGANLAGEVADGKFCEATIGCKSLKNG 200



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 114 KNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMW 224
           + K+ IVG GNWGSAIA +VG+   +    F+  V++W
Sbjct: 21  RKKIAIVGGGNWGSAIACVVGKTVKAQDEVFQPIVSIW 58


>Z22180-9|CAO82051.1|  304|Caenorhabditis elegans Hypothetical
           protein K11H3.1c protein.
          Length = 304

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 28/47 (59%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +3

Query: 111 PKNKVCIVGSGNWGSAIAKIVGRNAASL-SNFEDRVTMWVYEEIIEG 248
           PK KV I+GSGNWGSAIA+IVG    S    F+  V MWV+EEI+ G
Sbjct: 3   PK-KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNG 48



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 25/50 (50%), Positives = 35/50 (70%)
 Frame = +1

Query: 466 GI*YSRRAGIDLISLLLQDA*KFPVAVLMGANIASEVAEEKFCETTIGCR 615
           G+   +R G+ LIS  +++  K  V+VLMGAN+A EVA + FCE TIGC+
Sbjct: 75  GVSTEKRGGLKLISEEIKEILKIEVSVLMGANLAPEVANDNFCEATIGCK 124



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +2

Query: 248 KEVTEIINETHENVKYLPGHKLPSNV 325
           ++++E+IN  HEN+KYLPG  LP+NV
Sbjct: 49  EKLSEVINNRHENIKYLPGKVLPNNV 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,357,783
Number of Sequences: 27780
Number of extensions: 282339
Number of successful extensions: 872
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)