Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060360.seq
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...   149   2e-38
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.68 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.4  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   8.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.4  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score =  149 bits (362), Expect = 2e-38
 Identities = 75/147 (51%), Positives = 98/147 (66%)
 Frame = +2

Query: 248 KEVTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 427
           K++TEIINETHENVKYLPGHKLP N++A+PDVVEAAKDAD+L FVVPHQF++ ICS L G
Sbjct: 49  KKLTEIINETHENVKYLPGHKLPPNIIAIPDVVEAAKDADILTFVVPHQFIKRICSALFG 108

Query: 428 KIKPTAAALSLIKGFDIAEGLASILYHYYYKMPKNSLWLY*WEPILHRRLLRKNSAKRPL 607
           KIKPTA  LSLIKGFD  +G    L  +      +          L   +  +   +  +
Sbjct: 109 KIKPTAIGLSLIKGFDKKQGGGIELISHIISKQLHIPVSVLMGANLASEVANEMFCETTI 168

Query: 608 VVGT*CWAPLMRDIIQTDYFRVVVVDD 688
                  AP+++D+++T YF+VVVV+D
Sbjct: 169 GCKDKNMAPILKDLMETSYFKVVVVED 195



 Score = 79.8 bits (188), Expect = 2e-17
 Identities = 35/45 (77%), Positives = 40/45 (88%)
 Frame = +3

Query: 114 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEG 248
           K ++CIVGSGNWGS IAKI+G NAA+ SNFEDRVTM+VYEEII G
Sbjct: 4   KLRICIVGSGNWGSTIAKIIGINAANFSNFEDRVTMYVYEEIING 48



 Score = 61.7 bits (143), Expect = 6e-12
 Identities = 28/43 (65%), Positives = 34/43 (79%)
 Frame = +1

Query: 490 GIDLISLLLQDA*KFPVAVLMGANIASEVAEEKFCETTIGCRD 618
           GI+LIS ++      PV+VLMGAN+ASEVA E FCETTIGC+D
Sbjct: 130 GIELISHIISKQLHIPVSVLMGANLASEVANEMFCETTIGCKD 172


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 205 SKFDRLAAFRPTIFAIAEPQFP 140
           S F ++ A  PT+F+   P+FP
Sbjct: 347 SSFGKILATEPTLFSNVTPKFP 368


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -3

Query: 607 QWSFRRIFPQQPPMQYWLPLIQPQGIFRHLVIIVI 503
           QW+ R+  P    +++W+PL+ P  I  +++ +++
Sbjct: 486 QWTCRQPEPLIELIEHWMPLL-PNWILENILDMLV 519


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 398 VRTICSTLLGKIKPTAAALSLIKGFDIAEGLASILYHYYYKMPKNSLWLY*WEPILHRR 574
           VR+I ++L+  I P      +   FD+   L +  +H       N   L   EPIL  R
Sbjct: 224 VRSIGNSLM-VILPDLVGKKITHFFDLVRPLIAFKFHSILNRTNNIFELVTVEPILTER 281


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 487 PFGYIKSLNQRQSSCSRLYF 428
           P  Y+K+++   SSCS   F
Sbjct: 269 PVSYVKAIDVWMSSCSVFVF 288


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 603 HWLSGRNAGLR*CGISYRQTTSGSWWWT 686
           H+LS  +AGL   GIS   T    W  T
Sbjct: 218 HYLSPLSAGLFQGGISISGTALNCWTQT 245


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 603 HWLSGRNAGLR*CGISYRQTTSGSWWWT 686
           H+LS  +AGL   GIS   T    W  T
Sbjct: 89  HYLSPLSAGLFQGGISISGTALNCWTQT 116


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 603 HWLSGRNAGLR*CGISYRQTTSGSWWWT 686
           H+LS  +AGL   GIS   T    W  T
Sbjct: 218 HYLSPLSAGLFQGGISISGTALNCWTQT 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,155
Number of Sequences: 438
Number of extensions: 3783
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)