Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060359.seq
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    29   0.035
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   7.0  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 0.035
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = +1

Query: 418 PSRQPPTAESGLGGSRCCYRVPALVQARGHILKRFPSXPWLYPTKSKRSTRPNRLHLXER 597
           P    P+  SGLGG      +PAL    GH L+  P  P +Y   +  + R  R      
Sbjct: 76  PYAPHPSLSSGLGGGLSGMPMPALGFGLGHPLESVP-FPQVYSYFAGVNPRKQRRERTTF 134

Query: 598 LKAWXDIL*GV 630
            +A  D+L G+
Sbjct: 135 TRAQLDLLEGL 145


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
 Frame = -1

Query: 353 HPDRTYEYH---HHGHAEFGRQHVQYPMIQHWFG 261
           HP  T+ YH   H+    F   H  +      FG
Sbjct: 158 HPGMTFRYHFNVHNSGTHFWHSHSGFQRSDGTFG 191


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 141 HPAPSHSSLNTPTL 100
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,647
Number of Sequences: 336
Number of extensions: 2829
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)