Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060359.seq
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   117   2e-27
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   117   2e-27
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   4.4  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   5.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  117 bits (281), Expect = 2e-27
 Identities = 49/55 (89%), Positives = 51/55 (92%)
 Frame = +2

Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 418
           AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 32/58 (55%), Positives = 42/58 (72%)
 Frame = +3

Query: 81  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 254
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 510 IEKIPELXLVVPDKVQEINKTKQAASX*APQGMX*YPLRXQVXR-LXAGKGKMRNR 674
           IE+IPE+ LVV D VQ   KTK+A +           ++    R L AGKGK+RNR
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNR 199



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +1

Query: 478 VPALVQARGHILKRFPSXPWLY--PTKSKRSTRPNRLHLXERLKAWXDIL 621
           VP+L+ ARGH ++  P  P +     +S + T+   + L + +KA+ D++
Sbjct: 133 VPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTK-EAVALLKEIKAYRDVI 181


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  117 bits (281), Expect = 2e-27
 Identities = 49/55 (89%), Positives = 51/55 (92%)
 Frame = +2

Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 418
           AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 33/58 (56%), Positives = 42/58 (72%)
 Frame = +3

Query: 81  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 254
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 510 IEKIPELXLVVPDKVQEINKTKQAASX*APQGMX*YPLRXQVXR-LXAGKGKMRNR 674
           IE+IPE+ LVV D VQ   KTK+A +           ++    R L AGKGK+RNR
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNR 199



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +1

Query: 478 VPALVQARGHILKRFPSXPWLY--PTKSKRSTRPNRLHLXERLKAWXDIL 621
           VP+L+ ARGH ++  P  P +     +S + T+   + L + +KA+ D++
Sbjct: 133 VPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTK-EAVALLKEIKAYRDVV 181


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 142 APCTVSLFSEYTDTKGRATDRLISLL 65
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 99  KVG-LPIDSFRYFSEAIPLKY-TLIAVI 22
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,668
Number of Sequences: 5004
Number of extensions: 45739
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)