Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060359.seq
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 126 2e-29
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.16
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.65
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 3.5
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 3.5
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 29 4.6
SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6) 29 4.6
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 6.0
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 6.0
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_5168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 6.0
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 28 8.0
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 8.0
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 126 bits (303), Expect = 2e-29
Identities = 53/55 (96%), Positives = 54/55 (98%)
Frame = +2
Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 418
AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 55 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109
Score = 64.5 bits (150), Expect = 8e-11
Identities = 30/54 (55%), Positives = 40/54 (74%)
Frame = +3
Query: 90 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 251
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNK 53
Score = 35.1 bits (77), Expect = 0.053
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 IEKIPELXLVVPDKVQEINKTKQAASX*-APQGMX*YPLRXQVXRLXAGKGKMRNR 674
IEKI E+ LV+ D ++ + KT A A ++ AGKGKMRNR
Sbjct: 141 IEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNR 196
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 377 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 264
HH CY H Y Y+ H H + R H YP +H++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 362 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQ 255
Y +HP T+ YHH H + ++ Q+P + H + Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 362 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 270
Y +HP T+ YH H R H Q+P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.5 bits (68), Expect = 0.65
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 377 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 294
HH RH R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 386 TYVHHDTCYRRHPDRTYEYHHHGHA 312
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 341 TYEYHHHGHAEFGRQHVQYPMI-QHWFGDQLLAHAVGLP-RVLGHRNVN 201
+Y++HHHG E Q V I + W +L +H P RV+G ++
Sbjct: 21 SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -1
Query: 389 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 285
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 266 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 382
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = +2
Query: 251 GAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 412
G Q WG G+ + R GGG R G +G M GG P W R
Sbjct: 14 GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
>SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)
Length = 502
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 496 PERALGRGSSNGCRQGRSPLSEVDA 422
P+R +G ++GCRQ P SE D+
Sbjct: 476 PDRCQHKGCASGCRQHHGPCSEGDS 500
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 284 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 412
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 377 HHDTCYRRHPDRTYEYHHH 321
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 157 GRGLAAPCTVSLFSEYTDTKGRATDRLI 74
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_5168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 508 ILKRFPSXPWLYPTKSKRSTRPNRLH 585
+ RFPS P+LYP S + R ++H
Sbjct: 134 LFTRFPSHPFLYPQSSTQFLRVLKIH 159
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 383 YVHHDTCYRRHPDRTYEYHHHGH 315
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 377 HHDTCYRRHPDRTYEYHHH 321
HH + RH R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588
>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 66 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY-- 239
S +M L R + Y+E ++ + LP V AP+ D+V +V S K S + Y
Sbjct: 475 SPQMPLDFPRSFLEDYAEACANLK---QSLPQVHLAPLASDIVREVESSEVKLSLKFYVS 531
Query: 240 --CVSKELVTK 266
C S E V K
Sbjct: 532 ENCPSVEAVVK 542
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 377 HHDTCYRRHPDRTYEYHHHGH 315
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -1
Query: 365 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 270
CY + + + YHHH H H Q+ H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,425,255
Number of Sequences: 59808
Number of extensions: 388948
Number of successful extensions: 1115
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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