Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060359.seq
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   111   3e-25
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   9.3  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  111 bits (268), Expect = 3e-25
 Identities = 49/55 (89%), Positives = 50/55 (90%)
 Frame = +2

Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 418
           AG Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 57  AGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +3

Query: 90  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 248
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVN 54



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 510 IEKIPELXLVVPDKVQEINKTKQAASX*APQGM-X*YPLRXQVXRLXAGKGKMRNR 674
           I+++ E+ LVV DKV+   KTK+A        +           R  AGKGK+RNR
Sbjct: 143 IDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNR 198



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 478 VPALVQARGHILKRFPSXPWLYPTK--SKRSTRPNRLHLXERLKAWXDI 618
           +PAL+QARGH++ +    P +   K  S R T+   + L  R   W DI
Sbjct: 132 IPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFL-RRSHLWADI 179


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 174 PIRPDLVNDVHVSMSKNSRQPYCVSKELVTKPVLNHGVLDVLS 302
           P + D ++DVH+S S    Q     K +   P L H     LS
Sbjct: 205 PSKHDRLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTSSTLS 247


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 377 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 294
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical
           protein EEED8.16 protein.
          Length = 590

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +1

Query: 466 CCYRVPALVQARGHILKRFPSXPWLYPTKSKRSTRPNRLHLXERLKAWXD 615
           C Y VPA V+ R  I     S P +   K  R   PN+  L  + K   D
Sbjct: 160 CMYAVPAQVEVREIISFMCISLPMIVSIKVVRDPAPNQYMLIIKFKEHND 209


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 75  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV-SK 251
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV S 
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVASF 241

Query: 252 ELVTKPVLNHGVLDVLSPE 308
           E +T  +++  V +++ P+
Sbjct: 242 EEITDFIVS--VTEIVFPK 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,892,742
Number of Sequences: 27780
Number of extensions: 278563
Number of successful extensions: 890
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)