Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060358.seq
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    27   1.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   1.6  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    26   4.9  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   6.4  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    25   8.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.5  

>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 242 EWCAFADAGKTKEGGRNQSLDIVDAIPLFHHSHYVSPMAEVAL 370
           E   FAD  + K+G  N S    D+ P    S Y S   E+ L
Sbjct: 187 ESSTFADFCEHKDGTGNLSFSNFDSFPTVQRSRYASDFEELEL 229


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 308  RYLNFGSCHLP*SFRHQQKHTIHSTV 231
            R   FGSCH+P S RH+    + S +
Sbjct: 1038 RAKGFGSCHVPNSLRHKMNKVMLSVL 1063


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 529 GNKKMVQHLDSPAIK 573
           G KK++Q LDSPA+K
Sbjct: 81  GEKKVLQDLDSPALK 95


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 472 PWTSFNNIITEVLAGCIVTC 413
           P  S  NII +VLAGC   C
Sbjct: 70  PNYSLRNIIWDVLAGCSTAC 89


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 532 YPPQXTQQREILNNLF-SYLQPWTS 461
           YPP    +R++LN +F S L  W S
Sbjct: 288 YPPSLCTERKVLNKIFDSLLGCWPS 312


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 517  TQQREILNNLFSYLQPWTS 461
            T    ++ NL+ Y+QPW S
Sbjct: 1383 TNGEHLIPNLYRYIQPWES 1401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,783
Number of Sequences: 5004
Number of extensions: 39355
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)