Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060358.seq
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0108 - 11340504-11340680,11341580-11341665,11341784-113418... 42 4e-04
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 30 1.2
04_03_0094 - 11113279-11114469 29 3.7
04_03_0093 - 11085882-11087339 28 6.5
04_04_0060 + 22422822-22423003,22423158-22423229,22423271-224234... 27 8.7
02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431,395... 27 8.7
>04_03_0108 -
11340504-11340680,11341580-11341665,11341784-11341827,
11342339-11342428,11343762-11343928,11343986-11344010,
11344636-11344797,11345376-11345422,11345926-11345985,
11346094-11346465
Length = 409
Score = 41.9 bits (94), Expect = 4e-04
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +2
Query: 299 LDIVDAIPLFHHSHYVS--PMAEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPG 472
+ I DA+PL HH H++ P E+ALT +E ++ + GYY A N R + + P
Sbjct: 48 VSIADAVPLSHHPHHLPLLPTLELALTLVEDHFAAQGLAVVGYYHA--NARRDDADLPPV 105
Query: 473 LK-IAEKIVEYFPLLCXLWWVTKK 541
K + + + FP L KK
Sbjct: 106 AKRVGDHVFRNFPRAAVLLLDNKK 129
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 192 AYAKIILHAAKYPHCAVNGVLL 257
AY K+ LHA K+P AVNG+L+
Sbjct: 13 AYVKLALHALKHPAAAVNGLLV 34
>02_05_0941 +
32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +2
Query: 347 SPMAEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLKIAEKIVEYFPLLCXLW 526
SP + AL + E + SEN + YAA F+ + + PGL + E+ P LC
Sbjct: 195 SPSSRTALAEAE-LEYSENHISKSMYAA---FKITNLSK-PGL-----LEEFLPNLCLAI 244
Query: 527 WVTKKW 544
W T W
Sbjct: 245 WTTTPW 250
>04_03_0094 - 11113279-11114469
Length = 396
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Frame = +2
Query: 350 PMAEVALTQIETI----AQSENRVIAGYYAACENFRDNIVERCPGLK---IAEKIVEYFP 508
P V++ +ET+ +E+ + + C N D +E+CP +K +A ++ F
Sbjct: 177 PAGGVSMPSLETLFLKRIMAEDGAVQRLISGCPNIADLTLEQCPSVKRLVVASPRLDSFA 236
Query: 509 LLC 517
++C
Sbjct: 237 MIC 239
>04_03_0093 - 11085882-11087339
Length = 485
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +2
Query: 353 MAEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPG---LKIAEKIVEYFPLLC 517
M + + ++ I + + + + C N D +E+CP L +A +E F ++C
Sbjct: 173 MPSLEILSLKRIMATTDEAVQQLVSGCPNLADLTLEQCPSVADLVVASPRLESFAMIC 230
>04_04_0060 +
22422822-22423003,22423158-22423229,22423271-22423401,
22423504-22423697,22424832-22424906
Length = 217
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +2
Query: 305 IVDAIPLFHH----SHYVSPMAEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPG 472
I+ AIP++ V AEVA+ ++T+A++ +V AG A +N+ E
Sbjct: 114 IIVAIPIYRKIRALEDTVEKTAEVAIEVVDTVAEATEKV-AGELADAFPGNENLKEVASK 172
Query: 473 LKIAEKIVE 499
+K ++E
Sbjct: 173 IKTVADVIE 181
>02_01_0541 -
3950336-3950353,3950660-3951061,3951174-3951431,
3951554-3951754,3951861-3952203,3952286-3952344,
3952757-3953082,3953283-3953745,3954180-3954794,
3955600-3955896
Length = 993
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 302 DIVDAIPLFHHSHYVSPMAEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLKI 481
DI++AI + P + V+ +++ + R+ AAC N + I+++ PG+K
Sbjct: 102 DIIEAIEDAGFEAELLPDSTVSQPKLQNTLSGQFRIGGMTCAACVNSVEGILKKLPGVKR 161
Query: 482 A 484
A
Sbjct: 162 A 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,335,581
Number of Sequences: 37544
Number of extensions: 238464
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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