Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060358.seq
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   3e-08
SB_59715| Best HMM Match : Fz (HMM E-Value=0.026)                      29   2.9  
SB_21579| Best HMM Match : Phage_integrase (HMM E-Value=0.96)          28   6.7  
SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.8  

>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 27/67 (40%), Positives = 42/67 (62%)
 Frame = +2

Query: 299 LDIVDAIPLFHHSHYVSPMAEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLK 478
           L ++DA+PLFHH   ++P+ EVALTQ+++  ++    I GYY A E+  +N  +     K
Sbjct: 40  LYVLDAVPLFHHCLGLAPLLEVALTQVDSYCKTLGHHIIGYYQANEHIENNSPDNI-AYK 98

Query: 479 IAEKIVE 499
           I EKI +
Sbjct: 99  IGEKIAD 105



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = +3

Query: 180 IETGAYAKIILHAAKYPHCAVNGVLL 257
           I   AYAK++LHA+KYPH AVNGVLL
Sbjct: 5   ISARAYAKMLLHASKYPHKAVNGVLL 30


>SB_59715| Best HMM Match : Fz (HMM E-Value=0.026)
          Length = 145

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 416 GYYAACENFRDNIVERCPGLKIAEK 490
           G+Y AC++   +IVERCP +  + K
Sbjct: 80  GFYTACKDVCRSIVERCPSVFSSRK 104


>SB_21579| Best HMM Match : Phage_integrase (HMM E-Value=0.96)
          Length = 290

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +2

Query: 272 TKEGGRNQSLDIVDAIPLFHHSHYVSPMAEVALTQIETIAQSENRVIAGYYAACENFRDN 451
           TK GGR    +I + I      H+++P+  +A  + E +     + +  Y    EN R+N
Sbjct: 136 TKTGGRWSPSEITEKIKQTRTGHHIAPIVFLAYPEDEKLCIM--KYLKEYLLRTENLRNN 193


>SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = +2

Query: 230 TLCCEWCAFADAGKTKEGGRNQSLDIVDAIP--LFHHSHY-VSPMAEVALT---QIETIA 391
           TLC EW       KT + GR   L  +  +P  LF      +  ++E  LT   Q++ I 
Sbjct: 460 TLCIEWPKEELERKTTQDGRKLELTSLKGVPMSLFEMKQLELLTLSECDLTKQEQLKGIR 519

Query: 392 QSENRVIAGYYAACENFRDNIVER 463
            S N VI     +C + +D  + R
Sbjct: 520 SSHNSVILA-VLSCSDGQDVFLSR 542


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,664,362
Number of Sequences: 59808
Number of extensions: 291130
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)