Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060358.seq
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical ...    31   0.84 
U50311-7|AAA92311.1|  401|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical
           protein Y54E5A.7 protein.
          Length = 622

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 356 AEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLKIAEKIVEYFP 508
           A   L + E   + E  +   YYA  +   D I++   G +I EKI +YFP
Sbjct: 261 ALATLQKFEETTKPEVPIDHEYYAQRKEITDMILKAARGAEIHEKIEKYFP 311


>U50311-7|AAA92311.1|  401|Caenorhabditis elegans Hypothetical
           protein C25E10.1 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +2

Query: 359 EVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLKIAEKIVEYFP 508
           EVA   I  +  +E ++I      C+ FRD I +          I+ Y P
Sbjct: 318 EVAFLIINFVLHNEEKIIGESLTVCDKFRDQIADGLHEYYKKNDIINYAP 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,826,486
Number of Sequences: 27780
Number of extensions: 221333
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)