Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060358.seq
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.76 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.7  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   7.0  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   7.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.0  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 340 LRLTNGRSSTHTD*NHCSIRKPCDSRLLCSLR 435
           LR+  GR S H   N+ S R P +S   CS++
Sbjct: 305 LRIHRGRGSVHNGSNNGSPRSP-ESNSRCSVK 335


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +2

Query: 320 PLFHHSHYVSPMAEVALTQIETIAQSENRVIAGYYAACENF 442
           P  HH H    +  +   Q  T+++S +  +   YA+   F
Sbjct: 350 PHHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQF 390


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +2

Query: 437 NFRDNIVERCPGLKIAEKIVEYFPLLC 517
           NF++NIV+    + + E +++     C
Sbjct: 78  NFKENIVQELTSIYLDENVIKKLVAEC 104


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +2

Query: 437 NFRDNIVERCPGLKIAEKIVEYFPLLC 517
           NF++NIV+    + + E +++     C
Sbjct: 78  NFKENIVQELTSIYLDENVIKKLVAEC 104


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 245 IHSTVWILSGVQYYFS 198
           ++  ++ILSG  YYFS
Sbjct: 305 LNEWLYILSGCLYYFS 320


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,674
Number of Sequences: 438
Number of extensions: 2895
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)