Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060357.seq
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    58   9e-10
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po...    27   1.1  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   7.5  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   7.5  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   7.5  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   7.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   7.5  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    25   7.5  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 57.6 bits (133), Expect = 9e-10
 Identities = 25/55 (45%), Positives = 36/55 (65%)
 Frame = +1

Query: 259 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFELVILXLSAXFWTVKNISGXVL 423
           HP  +FF L+FR  AI+ YIL  +F+ SF+  F ++   L+   WTVKN+SG +L
Sbjct: 47  HPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLL 101


>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 198 RCLMMTPSHLVKRIMLINSCPSLHSVLPPGVPMLCDNCVHPVWVVLRLIHCKLR 359
           R L  + +H++     ++S  SL +V+   +P +  NC   V +VL  + C LR
Sbjct: 78  RSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNC-PGVKLVLVALKCDLR 130


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 339 VGEPPTQDVHNYRRASEHQVEE 274
           VG+  TQDV  YR  S+ Q +E
Sbjct: 733 VGKRKTQDVQFYREVSDIQFDE 754


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 404 FLTVQXSADSXRMTNSKLAMNESENHPH 321
           FLT+Q   DS ++T+  L+++  + H H
Sbjct: 369 FLTLQEVFDSLKLTSYDLSIDTLDMHAH 396


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 336 GEPPTQDVHNYRRASEHQVEEHYVGMDNCLLA 241
           GEPP  D  +  +    +++   V   NC+ A
Sbjct: 856 GEPPPSDKSSKEKVKPREIDIRIVDFANCVFA 887


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 351 CNE*VGEPPTQDVHNYRRASEHQVEEHYV 265
           C++  G P  Q   NY     H  ++HY+
Sbjct: 274 CDQVAGRPTHQYFKNYDSLERHFEKDHYI 302


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 324  TQDVHNYRRASEHQVEEHYVGMDN 253
            T+DVH YR  SE+ VE + +   N
Sbjct: 1106 TRDVHIYRLISEYTVESNMLRRAN 1129


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +1

Query: 265 YIVFFHLVFRCSAIIVYILCG-----WFSDSFIASFELVILXLSAXFWTVKNIS 411
           Y+  F LV   +A++V    G     W S   I      +L L A +W  KNI+
Sbjct: 225 YLGSFLLVTGITALVVTFNMGGDAFPWVSPVIITLLVSSVLILFAFYWVEKNIA 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,183
Number of Sequences: 5004
Number of extensions: 33286
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)