Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060357.seq
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327...    53   1e-07
05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342...    52   3e-07
06_01_1000 - 7778907-7780721                                           27   5.6  
08_01_0503 + 4364678-4364976,4365320-4365595,4366091-4366586           27   7.4  
08_01_0646 + 5592386-5592493,5592736-5592807,5592882-5593046,559...    27   9.8  
01_01_0559 - 4109690-4111003                                           27   9.8  

>01_03_0129 +
           12831947-12832048,12832358-12832414,12832514-12832717,
           12832799-12832858,12835026-12835152,12835801-12835889
          Length = 212

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 21/55 (38%), Positives = 33/55 (60%)
 Frame = +1

Query: 259 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFELVILXLSAXFWTVKNISGXVL 423
           +P   FFH++F+  A+  YIL   F  +F+  F + +L  +  FW VKN+SG +L
Sbjct: 42  NPKTCFFHVLFKAGALAFYILSALFVTNFVIIFVITVLLAALDFWVVKNVSGRIL 96


>05_01_0432 +
           3428920-3428934,3429007-3429111,3429341-3429397,
           3429499-3429702,3429790-3429849,3430797-3430923,
           3431420-3431520
          Length = 222

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = +1

Query: 259 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFELVILXLSAXFWTVKNISGXVL 423
           +P    FH++F+  A++ YIL   F  SF+  F + +   +  FW VKN+SG +L
Sbjct: 48  NPVTCLFHVLFKAGALVFYILFSLFVKSFVIIFVITVFLAALDFWVVKNVSGRIL 102


>06_01_1000 - 7778907-7780721
          Length = 604

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 204 LMMTPSHLVKR--IMLINSCPSLHSVLPPGVPML 299
           L+  PSH + R  + L+ + P+ H V PP  P+L
Sbjct: 69  LLAAPSHELTRASLALLLALPARHRVPPPSAPLL 102


>08_01_0503 + 4364678-4364976,4365320-4365595,4366091-4366586
          Length = 356

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 323 HRMYTIIAEHRNTRWKNTM*GWTTVY*HYPLHQMRWC 213
           H  YT +++ R  RW     GWTT   H    ++  C
Sbjct: 69  HGPYTGVSDGRVLRWGGAAAGWTTFAHHENYRKIPMC 105


>08_01_0646 +
           5592386-5592493,5592736-5592807,5592882-5593046,
           5594218-5594454
          Length = 193

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 243 LINSCPSLHSVLPPGVPMLCDNCVHPVWVVLRLIHCKLRISHSTA 377
           L+N+  +L ++ P  VP++ D  V P++V  R  H  LR   S A
Sbjct: 60  LVNA--ALMAMPPHSVPLVTDAVVEPIYVNARQYHGILRRRQSRA 102


>01_01_0559 - 4109690-4111003
          Length = 437

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 186 RXRSRCLMMTPSHLVKRIMLINSCPSLHSVLPPGVPMLCDNCVH 317
           R R+R     P   V     +N+ P LH+ LP G      NC +
Sbjct: 267 RSRTRAAGFEPDTTVNLCFAMNARPLLHASLPRGGAGFYGNCYY 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,559,709
Number of Sequences: 37544
Number of extensions: 216637
Number of successful extensions: 430
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)