Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060357.seq
         (466 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    27   0.24 
AY579078-1|AAT81602.1|  425|Anopheles gambiae neuropeptide F rec...    23   6.9  
DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide...    22   9.2  

>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 27.5 bits (58), Expect = 0.24
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 337 RRTTHTGCTQLSQSIGTPGGRTLCRDGQLFISIILF 230
           R T  + C +++Q  G P  +T C + +LFI  + F
Sbjct: 199 RYTAGSKCHRVAQGSGFPAWKTQCFNEELFIEALRF 234


>AY579078-1|AAT81602.1|  425|Anopheles gambiae neuropeptide F
           receptor protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 280 HLVFRCSAIIVYILCGWFSDSFIASFELVILXLSA 384
           H+    SA    +L GW +D+F   F  ++   SA
Sbjct: 315 HMAGMSSACSNPLLYGWLNDNFRKEFNELLCRTSA 349


>DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide F
           receptor protein.
          Length = 575

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 218 IAFGEEDNANKQLSIPT*CSSTWCSDALR 304
           +A    DNA   LS    C   W S+ +R
Sbjct: 237 VALNGTDNATGPLSSAMYCEELWPSEEMR 265


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,579
Number of Sequences: 2352
Number of extensions: 8779
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 40395045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)