Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060357.seq
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical p...    55   2e-08
U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical p...    55   2e-08
Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical
           protein C34D4.4b protein.
          Length = 205

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 24/54 (44%), Positives = 35/54 (64%)
 Frame = +1

Query: 262 PYIVFFHLVFRCSAIIVYILCGWFSDSFIASFELVILXLSAXFWTVKNISGXVL 423
           P IV  HL F+ +A+  Y    +F++SFI  F +++  LS  FWTVKNI+G +L
Sbjct: 31  PTIVLAHLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFWTVKNITGRLL 84


>U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical
           protein C34D4.4a protein.
          Length = 247

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 24/54 (44%), Positives = 35/54 (64%)
 Frame = +1

Query: 262 PYIVFFHLVFRCSAIIVYILCGWFSDSFIASFELVILXLSAXFWTVKNISGXVL 423
           P IV  HL F+ +A+  Y    +F++SFI  F +++  LS  FWTVKNI+G +L
Sbjct: 73  PTIVLAHLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFWTVKNITGRLL 126


>Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical
           protein F28C6.4b protein.
          Length = 689

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 304 IIVYILCGWFSDSFIASFELVILXLSAXFWTVKNISGXV-LDWT 432
           +++Y +   FS   + S E V L +S+ F+T  NI   + L WT
Sbjct: 610 LVIYNMGKLFSKLNLGSVEFVTLCMSSFFYTFINIIFNISLRWT 653


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,035,694
Number of Sequences: 27780
Number of extensions: 193299
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)