Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060357.seq
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   0.23 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   3.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   3.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   3.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.9  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.6  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect(2) = 0.23
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 177 AGWFINNQYYXFHKLI 130
           +GW++N+ Y   +KLI
Sbjct: 206 SGWYLNHDYNLENKLI 221



 Score = 21.8 bits (44), Expect(2) = 0.23
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 156 QYYXFHKLILNEYQNRSIGTD 94
           +Y   HKL+LN Y    +  D
Sbjct: 258 EYLYSHKLLLNRYYLERLSND 278


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 225 LVKRIMLINSCPSLH-SVLPPGVPMLCDNC 311
           L   I+ +     LH ++LPPGV   CD C
Sbjct: 348 LPSAILAMRLSHPLHGNLLPPGVCYTCDVC 377


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 156 QYYXFHKLILNEYQNRSIGTD 94
           +Y   HKL+LN Y    +  D
Sbjct: 258 EYLYSHKLLLNRYYLERLSND 278


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -2

Query: 165 INNQYYXF-HKLILNEYQNRSIGTD 94
           I  ++Y F HK +LN Y    +  D
Sbjct: 253 IRGEFYFFLHKQVLNRYYLERLSND 277


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -2

Query: 165 INNQYYXF-HKLILNEYQNRSIGTD 94
           I  ++Y F HK +LN Y    +  D
Sbjct: 253 IRGEFYFFLHKQVLNRYYLERLSND 277


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 407 IFLTVQXSADSXRMTNSKLAMNESENH 327
           + +T + + D+   T + LAM   E H
Sbjct: 174 VHVTFKLTFDNRAFTQASLAMTREEKH 200


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 288 VPMLCDNCVHP 320
           V   C NC+HP
Sbjct: 31  VRAFCRNCIHP 41


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 288 VPMLCDNCVHP 320
           V   C NC+HP
Sbjct: 479 VRAFCRNCIHP 489


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 371 RMTNSKLAMNESENHPHRMYTIIAEHRNT 285
           R+TNS    +ES+N  +   T    H +T
Sbjct: 217 RLTNSNSIKHESDNSDYSHTTDENRHSST 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,563
Number of Sequences: 438
Number of extensions: 2367
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)