Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060357.seq
         (466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09330.1 68414.m01044 expressed protein contains 3 transmembr...    51   3e-07
At4g06676.1 68417.m01071 expressed protein ; expression supporte...    28   2.7  
At4g25120.1 68417.m03614 UvrD/REP helicase family protein contai...    28   3.6  
At2g34720.1 68415.m04264 CCAAT-binding transcription factor (CBF...    28   3.6  
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont...    28   3.6  

>At1g09330.1 68414.m01044 expressed protein contains 3 transmembrane
           domains; contains Pfam profile PF05832: Eukaryotic
           protein of unknown function
          Length = 186

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 21/55 (38%), Positives = 34/55 (61%)
 Frame = +1

Query: 259 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFELVILXLSAXFWTVKNISGXVL 423
           +P    FH++F+ +A+  YIL   F +SF+  F + +L  +  FW VKN+SG +L
Sbjct: 16  NPRTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFWVVKNVSGRIL 70


>At4g06676.1 68417.m01071 expressed protein ; expression supported
           by MPSS
          Length = 258

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 407 IFLTVQXSADSXRMTNSKLAMNESENHPHRMYTIIAEHRNTRWKNT 270
           +FL +  S DS   +N + A+  S+ H H      A  + T  KNT
Sbjct: 209 VFLVILSSTDSC-FSNFRAALRSSDTHAHGRRHAAANSKATDMKNT 253


>At4g25120.1 68417.m03614 UvrD/REP helicase family protein contains
           Pfam PF00580: UvrD/REP helicase
          Length = 1122

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 195 SRCLMMTPSHLVKRIMLINSCPSLHSVLP 281
           SR L   P HL++  M +N C  +H  LP
Sbjct: 895 SRFLKEIPGHLLQGDMSVNDCRKVHENLP 923


>At2g34720.1 68415.m04264 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 198

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 282 PGVPMLCDNCVHPVWVVLRLIHCKLRISHSTA 377
           PGVP+ CD    PV+V  +  H  LR   S A
Sbjct: 87  PGVPLQCDAVEEPVFVNAKQYHGILRRRQSRA 118


>At2g20210.1 68415.m02363 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 604

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 333 LRLIHCKLRISHSTAVCRXL 392
           L LIHCKL +S  +A+C  L
Sbjct: 233 LELIHCKLSLSSISAICTSL 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,238,232
Number of Sequences: 28952
Number of extensions: 172291
Number of successful extensions: 302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)