Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060356.seq
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 134 1e-32
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 84 2e-17
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 82 6e-17
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 75 7e-15
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 75 1e-14
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 67 3e-12
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 66 4e-12
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 64 1e-11
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 30 0.36
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 29 0.48
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 26 4.4
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 26 5.9
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|... 25 7.8
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 134 bits (324), Expect = 1e-32
Identities = 66/101 (65%), Positives = 77/101 (76%)
Frame = +1
Query: 325 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 504
+VEHQI KLLVQL++SQDDEIGDGTTGVVVLAGALLEQA L+DKGIHPIRIADGYE A
Sbjct: 84 EVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKAC 143
Query: 505 ARALTHLDSVSEAFPVNKNTRGNLIKVXMTTLGSKVVVXCH 627
A+ HLD++S+ + NL + T+LGSKVV H
Sbjct: 144 QVAVKHLDAISDVVDFSPENTTNLFRSAKTSLGSKVVSKAH 184
Score = 97.9 bits (233), Expect = 1e-21
Identities = 42/72 (58%), Positives = 59/72 (81%)
Frame = +3
Query: 108 DEYGRPFIILRDQDRQKRLTGTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVT 287
D+ G PFI++RDQ++++RL G DA+KSHI A + +A+ +RTSLGPRG K+++S DG++T
Sbjct: 12 DDQGNPFILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEIT 71
Query: 288 VTNDGATILKMM 323
VTNDGATIL M
Sbjct: 72 VTNDGATILDQM 83
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 83.8 bits (198), Expect = 2e-17
Identities = 42/97 (43%), Positives = 60/97 (61%)
Frame = +1
Query: 325 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 504
DVEH GK+LV+LAQ QD E+GDGTT VV++A LL +A+ L+ IHP I GY +A
Sbjct: 71 DVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAI 130
Query: 505 ARALTHLDSVSEAFPVNKNTRGNLIKVXMTTLGSKVV 615
A+ + V V+ + +LI V T++ SK++
Sbjct: 131 REAVKFMTDVLSC-SVDSLGKESLINVAKTSMSSKII 166
Score = 55.2 bits (127), Expect = 8e-09
Identities = 25/56 (44%), Positives = 39/56 (69%)
Frame = +3
Query: 156 KRLTGTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILKMM 323
++++G D ++ A IA+ +++SLGP G K++V GDVTVTNDGATIL ++
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLL 70
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 82.2 bits (194), Expect = 6e-17
Identities = 37/97 (38%), Positives = 64/97 (65%)
Frame = +1
Query: 325 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 504
+V H K +++LA++QD+E+GDGTT V++LAG +L AS LLD+ IHP+ + ++ A
Sbjct: 69 EVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQAL 128
Query: 505 ARALTHLDSVSEAFPVNKNTRGNLIKVXMTTLGSKVV 615
AL+ +D ++ PVN + + ++ T +G+K+V
Sbjct: 129 EDALSIIDEIT--LPVNVDDNAEMFRLIRTCIGTKLV 163
Score = 46.8 bits (106), Expect = 3e-06
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +3
Query: 159 RLTGTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILK 317
R G A S+IQA + +A +RT LGPR K+++ G V +TNDG IL+
Sbjct: 14 RQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILR 66
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 75.4 bits (177), Expect = 7e-15
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Frame = +1
Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
V H K+LV L+ +QD E GDGTT VV+LAG++L A LL KGIHP IA+ ++ AA
Sbjct: 70 VLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAG 129
Query: 508 RALTHLDSVSE-AFPVNKNTRGNLIKVXMTTLGSKVV 615
+D + E A + + R +L++ T+L SK+V
Sbjct: 130 FT---VDCMKENALAIELSDRESLLRAATTSLNSKIV 163
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3
Query: 144 QDRQKRLTGTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILK 317
QDR+K + S+I A R +A +RTSLGP+G K++ + G+V +TNDGATILK
Sbjct: 12 QDREKP---QEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILK 66
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 74.9 bits (176), Expect = 1e-14
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Frame = +1
Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
+++ + + A +QDD GDGTT V +L G LL+QA + +G+HP I+DG+ +A
Sbjct: 67 IQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKN 126
Query: 508 RALTHLDSVSEAFPVNKNTRGNLIKVXMTT-LGSKVV 615
ALT LDS F V++ N+ K ++T + SKVV
Sbjct: 127 EALTFLDSFKTDFEVDREVLLNVAKTSLSTKISSKVV 163
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 177 AIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILKMM 323
A++ +I A + L+++LGP G+ K++V G + +T DG +L M
Sbjct: 17 ALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEM 65
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 66.9 bits (156), Expect = 3e-12
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Frame = +1
Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
+++ K+LV +++ QDDE+GDGTT V V A LL QA +++ IHP I DGY +A
Sbjct: 72 LDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATK 131
Query: 508 RALTHL--DSVSEAFPVNKNTRGNLIKVXMTTLGSKVV 615
A+ L S+ + K R +L + TTL SK++
Sbjct: 132 TAIDALRASSIDNSSDPAK-FRSDLENIARTTLSSKIL 168
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 123 PFIILRDQDRQKRLTGTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVS-SDGDVTVTND 299
P I + Q+R G +A S + ++++LGP+G K++ S S GD+ VTND
Sbjct: 5 PHQIFNESGIQER--GENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTND 62
Query: 300 GATILK 317
GATILK
Sbjct: 63 GATILK 68
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 66.1 bits (154), Expect = 4e-12
Identities = 34/95 (35%), Positives = 50/95 (52%)
Frame = +1
Query: 325 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 504
+V H KL+V Q Q++E+GD VVV G LL +A N++ G+ P+ IA GYEMA
Sbjct: 76 EVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMAL 135
Query: 505 ARALTHLDSVSEAFPVNKNTRGNLIKVXMTTLGSK 609
+ + L+ + + LIK T + SK
Sbjct: 136 SHTMEVLEEICADKIETVESEKELIKAIRTCISSK 170
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +3
Query: 174 DAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILK 317
DA+ + A R+++ RTSLGP G K++V+ +TND ATI++
Sbjct: 26 DAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIR 73
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 64.5 bits (150), Expect = 1e-11
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Frame = +1
Query: 325 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 504
D+ H K LV +A++QD E+GDGTT VVV AG LL +A ++ G+ I GY AA
Sbjct: 74 DIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAA 133
Query: 505 ARALTHLDSVSEAFPVNK--NTRGNLIKVXMTTLGSKVV 615
A+ + ++ ++ R L K T + SK++
Sbjct: 134 QLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLI 172
Score = 55.2 bits (127), Expect = 8e-09
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +3
Query: 123 PFIILRDQDRQKRLTGTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDG 302
P I+L++ + G + S+I A + T+RT+LGP G+ KLMV G+V ++NDG
Sbjct: 9 PVIVLKEGTDDSQ--GRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66
Query: 303 ATILKMM 323
ATI+K++
Sbjct: 67 ATIMKLL 73
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 168 GTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILK 317
G DA S + +A + +LGP+G L+ G +T DG T+ +
Sbjct: 40 GVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVAR 89
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 29.5 bits (63), Expect = 0.48
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 344 VNYLCNWLRVKMTKLVMVPQGLLFLLVHSLSKPQICWTKVSI 469
+NYL WL V L+ V G+LF++ + S + + K+SI
Sbjct: 146 MNYLHRWLSVYAV-LISVLHGILFMIFSAQSYKPLLYDKISI 186
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 227 AKSACNLSGCLYM*LYGIGTGKSFLSILIP 138
+ S +L C Y + GIG K F SI++P
Sbjct: 350 SSSVVDLHYCPYEDILGIGHAKGFESIIVP 379
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = -2
Query: 400 WYHHQFRHLDSEPIAQVVYQSDAQR---PIIFRIVAPSFVTVTSPSDDTISFQDP 245
W+HH F H+ + ++Y +R P + V ++TS S D P
Sbjct: 162 WHHHVFSHIRDSLLQNLLYMFTKKRLYEPTDMKYVEVCVDSITSLSFDKTDMTKP 216
>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 261 MVSSDGDVTVTNDGATIL 314
MVS DGDVT+ DG +L
Sbjct: 143 MVSFDGDVTLYEDGQPLL 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,150
Number of Sequences: 5004
Number of extensions: 59188
Number of successful extensions: 139
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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