Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060356.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                 149   2e-36
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               69   3e-12
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   67   1e-11
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      60   1e-09
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              52   4e-07
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              52   6e-07
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                38   0.008
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            33   0.22 
SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7)                      33   0.29 
SB_11519| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_21416| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_4638| Best HMM Match : DUF1283 (HMM E-Value=0.46)                   28   8.1  

>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score =  149 bits (361), Expect = 2e-36
 Identities = 69/102 (67%), Positives = 87/102 (85%)
 Frame = +1

Query: 325 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 504
           +V+HQI KL+V+L++SQD+EIGDGTTGVVVLAGALLE A  LLD GIHPIRIADGYE+AA
Sbjct: 80  EVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAA 139

Query: 505 ARALTHLDSVSEAFPVNKNTRGNLIKVXMTTLGSKVVVXCHR 630
             AL H+DS+++ FPV+K+ + +LI+  MTTLGSK+V  CHR
Sbjct: 140 KIALEHMDSIADNFPVDKDNKESLIQTAMTTLGSKIVSRCHR 181



 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 33/47 (70%), Positives = 39/47 (82%)
 Frame = +3

Query: 183 KSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILKMM 323
           +SHI A R +AS L+TSLGP+G  K+MVS DG+VTVTNDGATIL MM
Sbjct: 33  QSHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMM 79


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 35/95 (36%), Positives = 60/95 (63%)
 Frame = +1

Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
           ++H    L+ ++A +QDD  GDGTT  V++ G LL+QA   + +G+HP  + +G+E+A  
Sbjct: 171 IQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKK 230

Query: 508 RALTHLDSVSEAFPVNKNTRGNLIKVXMTTLGSKV 612
           +AL  L+ V  +  ++++T   LI V  T+L +KV
Sbjct: 231 KALEVLEEVKVSREMDRDT---LINVAKTSLRTKV 262


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
 Frame = +1

Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
           +++   K+LV+L++ QDDE+GDGTT V VL   LL++A  L+   IHP  I  G+  +  
Sbjct: 73  IDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVK 132

Query: 508 RALTHLDSVSEAFPVN-KNTRGNLIKVXMTTLGSKVVVXCHR 630
            A   L++ +     + +  R +L+ +  TTL SK++V  HR
Sbjct: 133 AAEKALEAAAVDHSSDPEKFREDLMNIARTTLSSKILVQ-HR 173



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
 Frame = +3

Query: 129 IILRDQDRQKRLTGTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVS--SDGDVTVTNDG 302
           + + +Q  ++    T  + S + A   I   ++++LGP+G  K++ S   +G++ VTNDG
Sbjct: 6   VSILNQGAEEERAETARLSSFVGAIA-IGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDG 64

Query: 303 ATILKMMG 326
           ATILK +G
Sbjct: 65  ATILKSIG 72


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
 Frame = +1

Query: 361 LAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAARALTHLDSVSE 540
           L++ QDDE+GDGTT V VLA  LL++A  L+   IHP  I  G+  +   A   L++ + 
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAV 61

Query: 541 AFPVN-KNTRGNLIKVXMTTLGSKVVVXCHR 630
               + +  R +L+ +  TTL SK++V  HR
Sbjct: 62  DHSSDPEKFRDDLMNIARTTLSSKILVQ-HR 91


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
 Frame = +1

Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
           V+H   K +++++++QD+E+GDGTT V++LAG  +  A   L++ +HP +I   Y +A  
Sbjct: 14  VKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMD 73

Query: 508 RALTHL-DSVSEAFPVNKNTRGNLIK 582
             +  L   + E       T G+ ++
Sbjct: 74  DMIDILKQQIREELQYRSRTYGHCLR 99


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
 Frame = +1

Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
           V+H   K +++++++QD+E+GDGTT V++LAG  +  A   L++ +HP +I   Y +A  
Sbjct: 211 VKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMD 270

Query: 508 RALTHL-DSVSEAFPVNKNTRGNLIK 582
             +  L   + E       T G+ ++
Sbjct: 271 DMIDILKQQIREELQYRSRTYGHCLR 296


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 22/42 (52%), Positives = 32/42 (76%)
 Frame = +3

Query: 186 SHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATI 311
           ++I A + +A  +RTSLGP+G  K++   +GDVT+TNDGATI
Sbjct: 28  TNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 24/52 (46%), Positives = 35/52 (67%)
 Frame = +3

Query: 168 GTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILKMM 323
           G   + S+I A + IA  +RT+LGPRG  KL+V   G  T++NDGATI+ ++
Sbjct: 653 GIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATIINLL 704


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
 Frame = +3

Query: 12  LRRTEILNLFSSFVCALFKS*KMALFPGSVAFDEYGRPFIILRDQDRQKRLT-GTDAIKS 188
           LRR+  L+ ++S+  +L    +  L+         G  F   R Q+  K L  G +A  +
Sbjct: 19  LRRSTFLHTWTSYASSLQAYRRSELY-------SLGEGFSTSRFQNSPKELKFGAEARAA 71

Query: 189 HIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILK 317
            +Q    +A  +  +LGP+G   ++  S G   +T DG T+ K
Sbjct: 72  MLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAK 114



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 325 DVEHQIGKLLVQ-LAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIA 483
           D    IG  LVQ +A + ++E GDGTT   VLA ++  +    + KG +P  ++
Sbjct: 120 DKYQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQEVS 173


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 192 IQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILKMM 323
           +Q  +     L+ S GP G   ++ SS G++ +TN G+ IL+ +
Sbjct: 6   LQTCQNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESL 49


>SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7)
          Length = 293

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -2

Query: 439 LAQGVHQQEQQPLWYHHQFRHLDSEPIAQVVYQSDAQRPIIFRIVAPSFVTVTSPSDDTI 260
           L Q + +Q    L+ HH    L     A ++Y + A   +I   + PSF+T+T P  + I
Sbjct: 86  LPQSIIRQTATKLFNHHAATILYYHHAATMLYSNHATTMLITVTLLPSFITITLPPSNII 145


>SB_11519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 326 TLSIRLVNYLCNWLRVKMTKLVMVPQGLLFL 418
           TL + +V +LC W  + +  L+   +G+LFL
Sbjct: 241 TLFVTVVGFLCCWTPILIMDLIEFARGILFL 271


>SB_21416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 295 FVTVTSPSDDTISFQDPRGPRDVRRVLAI 209
           F T+++PS  TIS  +   P+D RRV AI
Sbjct: 121 FSTISNPSKTTISRVNISTPQDFRRVSAI 149


>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 556 KNTRGNLIKVXMTTLGSKVVVXCHRLIGRNSC*CCPGCXRL 678
           +N R  ++++ +TT+    V  C  L    SC C  GC  L
Sbjct: 34  QNIRRFVVEICVTTMNLATVKNCLVLASAKSCPCTCGCEDL 74


>SB_4638| Best HMM Match : DUF1283 (HMM E-Value=0.46)
          Length = 986

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = -2

Query: 508  GRQPSHNHRLYESDGYLCPTDLRLAQGVHQQEQQPLWYHHQFRHLDSEPIAQVVYQSDAQ 329
            GR       LYE    +CPT     +  H  ++  ++  H        P+ +    S AQ
Sbjct: 833  GRFSEEIKLLYEDKYDVCPTQSVTTKSTHGYDKVEVFITHDEPATQYIPVEKARSSSVAQ 892

Query: 328  RPIIFRIVAPSFVTVTS 278
            + +I  I+  +F+ VT+
Sbjct: 893  KAVILVII--NFICVTT 907


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,227,234
Number of Sequences: 59808
Number of extensions: 492210
Number of successful extensions: 1154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)