Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060356.seq
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 126 1e-29
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 126 1e-29
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 81 7e-16
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 78 6e-15
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 73 2e-13
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 71 1e-12
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 69 4e-12
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 68 5e-12
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 62 4e-10
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 61 6e-10
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 61 8e-10
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 44 1e-04
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 44 1e-04
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 42 4e-04
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 41 7e-04
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 41 9e-04
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 35 0.044
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 31 0.72
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 31 0.95
At5g16490.1 68418.m01927 p21-rho-binding domain-containing prote... 30 1.7
At3g45190.1 68416.m04877 SIT4 phosphatase-associated family prot... 29 2.9
At1g55545.1 68414.m06357 nucleoporin-related similar to nucleopo... 27 8.8
At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly simila... 27 8.8
At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly simila... 27 8.8
At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containi... 27 8.8
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 126 bits (304), Expect = 1e-29
Identities = 60/102 (58%), Positives = 79/102 (77%)
Frame = +1
Query: 325 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 504
DV++QI KL+V+L++SQD EIGDGTTGVVV+AGALLEQA LD+GIHPIRIA+GYEMA+
Sbjct: 2 DVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMAS 61
Query: 505 ARALTHLDSVSEAFPVNKNTRGNLIKVXMTTLGSKVVVXCHR 630
A+ HL+ +++ F + N L++ MTTL SK+V C R
Sbjct: 62 RVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKR 103
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 126 bits (304), Expect = 1e-29
Identities = 60/102 (58%), Positives = 79/102 (77%)
Frame = +1
Query: 325 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 504
DV++QI KL+V+L++SQD EIGDGTTGVVV+AGALLEQA LD+GIHPIRIA+GYEMA+
Sbjct: 78 DVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMAS 137
Query: 505 ARALTHLDSVSEAFPVNKNTRGNLIKVXMTTLGSKVVVXCHR 630
A+ HL+ +++ F + N L++ MTTL SK+V C R
Sbjct: 138 RVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKR 179
Score = 98.7 bits (235), Expect = 3e-21
Identities = 44/76 (57%), Positives = 61/76 (80%)
Frame = +3
Query: 96 SVAFDEYGRPFIILRDQDRQKRLTGTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSD 275
++AFDE+GRPFIILR+QD++ RL G DA K++I A + +A LR+SLGP+G K++ D
Sbjct: 2 ALAFDEFGRPFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPD 61
Query: 276 GDVTVTNDGATILKMM 323
GD+T+TNDGATIL+ M
Sbjct: 62 GDITITNDGATILEQM 77
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 81.0 bits (191), Expect = 7e-16
Identities = 44/97 (45%), Positives = 61/97 (62%)
Frame = +1
Query: 325 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 504
+V K+LV+L++SQD GDGTT VVV+AGALL++ +LL GIHP I+D A
Sbjct: 78 EVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKAC 137
Query: 505 ARALTHLDSVSEAFPVNKNTRGNLIKVXMTTLGSKVV 615
+A+ L ++ A PV R +L+K T+L SKVV
Sbjct: 138 GKAIDILTAM--AVPVELTDRDSLVKSASTSLNSKVV 172
Score = 50.8 bits (116), Expect = 8e-07
Identities = 21/46 (45%), Positives = 35/46 (76%)
Frame = +3
Query: 186 SHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILKMM 323
++I + R ++ +RTSLGP+G K++ +++G+V +TNDGATIL M
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKM 77
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 77.8 bits (183), Expect = 6e-15
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Frame = +1
Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
+++ K+LV +++ QDDE+GDGTT VVVLAG LL +A L+ IHP+ I GY MA+
Sbjct: 71 IDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMASE 130
Query: 508 RALTH-LDSVSEAFPVNKNTRGNLIKVXMTTLGSKVV 615
A L V + + R +L+K+ MTTL SK++
Sbjct: 131 CARNALLKRVIDNKDNAEKFRSDLLKIAMTTLCSKIL 167
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Frame = +3
Query: 210 IASTLRTSLGPRGS*KLMVSSDGD--VTVTNDGATILKMM 323
I+ ++++LGP+G K++ S+ VTVTNDGATILK +
Sbjct: 30 ISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATILKSL 69
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 72.5 bits (170), Expect = 2e-13
Identities = 37/97 (38%), Positives = 59/97 (60%)
Frame = +1
Query: 325 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 504
+VEH K+LV+LA+ QD E+GDGTT VV++A LL++A++L+ IHP I GY +A
Sbjct: 69 EVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAM 128
Query: 505 ARALTHLDSVSEAFPVNKNTRGNLIKVXMTTLGSKVV 615
+ +++ V K + LI T++ SK++
Sbjct: 129 RESCKYIEE-KLVTKVEKLGKVPLINCAKTSMSSKLI 164
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/55 (45%), Positives = 39/55 (70%)
Frame = +3
Query: 159 RLTGTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILKMM 323
R +G D ++ A + +++ ++TSLGP G K++V GDVT+TNDGATIL+M+
Sbjct: 14 RQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRML 68
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/95 (35%), Positives = 56/95 (58%)
Frame = +1
Query: 325 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 504
DV H K +++L+++QD+E+GDGTT V+VLAG +L A L+K HP I Y A
Sbjct: 69 DVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKAL 128
Query: 505 ARALTHLDSVSEAFPVNKNTRGNLIKVXMTTLGSK 609
++ LD + A ++ N R ++ + + +G+K
Sbjct: 129 EDSIAVLDKI--AMSIDINDRSQVLGLVKSCIGTK 161
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/65 (38%), Positives = 40/65 (61%)
Frame = +3
Query: 123 PFIILRDQDRQKRLTGTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDG 302
P ++L D KR +G+ +IQA + +A +RT+LGPR K+++ + G + VTNDG
Sbjct: 4 PVLVLSDS--LKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDG 61
Query: 303 ATILK 317
IL+
Sbjct: 62 NAILR 66
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 68.5 bits (160), Expect = 4e-12
Identities = 30/51 (58%), Positives = 42/51 (82%)
Frame = +3
Query: 96 SVAFDEYGRPFIILRDQDRQKRLTGTDAIKSHIQAXRQIASTLRTSLGPRG 248
++AFDE+GRPFIILR+QD++ RL G DA K++I A + +A LR+SLGP+G
Sbjct: 2 ALAFDEFGRPFIILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKG 52
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 68.1 bits (159), Expect = 5e-12
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Frame = +1
Query: 325 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 504
D+ H K+LV +A+SQD E+GDGTT VV+LA L++A ++ G+H + Y A+
Sbjct: 73 DIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTAS 132
Query: 505 ARALTHLDSVSEAFPVN--KNTRGNLIKVXMTTLGSKVV 615
A+ + ++ + + +G L K TTL SK++
Sbjct: 133 TLAIAKVKELAVSIEGKSVEEKKGLLAKCAATTLSSKLI 171
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +3
Query: 168 GTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILKMM 323
G + S+I A + +RT+LGPRG KL+ G VT++NDGATI+K++
Sbjct: 21 GKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLL 72
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/72 (38%), Positives = 43/72 (59%)
Frame = +1
Query: 325 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 504
+++H KLLV A++Q +EIGDG + AG LL+ A L+ G+HP I GY A
Sbjct: 77 EIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAV 136
Query: 505 ARALTHLDSVSE 540
++A+ L+ + E
Sbjct: 137 SKAVEILEQLVE 148
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +3
Query: 156 KRLTGTD-AIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATIL 314
+ L+G D A+ +I+A +++++ RTSLGP G K++++ + VTND ATI+
Sbjct: 20 RHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 73
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = +1
Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
+++ ++ + A +QDD GDGTT V+ G L++Q+ +D+G+HP + DG+E+A
Sbjct: 68 IQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKR 127
Query: 508 RALTHLDSVSEAFPVNKNTRGNLIK-VXMTTLGSKV 612
L LD+ + ++K V TTL +K+
Sbjct: 128 ATLQFLDNFKTPVVMGDEVDKEILKMVARTTLRTKL 163
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +3
Query: 162 LTGTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILKMM 323
L + A+ I A + + L+++LGP+G+ K++V GD+ +T DG T+LK M
Sbjct: 13 LNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEM 66
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 60.9 bits (141), Expect = 8e-10
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = +1
Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
+++ ++ + A +QDD GDGTT V+ G L++Q+ +D+G+HP + DG+E+A
Sbjct: 68 IQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKR 127
Query: 508 RALTHLDSVSEAFPVNKNTRGNLIK-VXMTTLGSKV 612
L LD+ + ++K V TTL +K+
Sbjct: 128 ATLQFLDTFKTPVVMGDEPDKEILKMVARTTLRTKL 163
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +3
Query: 162 LTGTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILKMM 323
L + A+ I A + + L+++LGP+G+ K++V GD+ +T DG T+LK M
Sbjct: 13 LNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEM 66
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +1
Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
VE+ KL+ Q A +D GDGTT VVLA + + ++ G +P+ I G E A
Sbjct: 121 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 180
Query: 508 RALTHLDSVSE 540
+T L +S+
Sbjct: 181 ALVTELKKMSK 191
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 207 QIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILK 317
++A + +LGP+G ++ S G + NDG T+ +
Sbjct: 77 KLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 113
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +1
Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
VE+ KL+ Q A +D GDGTT VVLA + + ++ G +P+ I G E A
Sbjct: 121 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 180
Query: 508 RALTHLDSVSE 540
+T L +S+
Sbjct: 181 ALVTELKKMSK 191
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 207 QIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILK 317
++A + +LGP+G ++ S G + NDG T+ +
Sbjct: 77 KLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 113
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/71 (33%), Positives = 36/71 (50%)
Frame = +1
Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
VE+ KL+ Q A +D GDGTT VVLA L+ + ++ G +P+ I G E
Sbjct: 117 VENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTK 176
Query: 508 RALTHLDSVSE 540
+ L +S+
Sbjct: 177 ALVAELKKMSK 187
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 177 AIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILK 317
AIK ++A + +LGP+G ++ S G + NDG T+ +
Sbjct: 63 AIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 109
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +1
Query: 346 KLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAARALTHL 525
KL+ Q +D GDG+T ++LA L+ + ++ G +PI++A G E + L
Sbjct: 111 KLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLEL 170
Query: 526 DSVS 537
S+S
Sbjct: 171 KSMS 174
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 210 IASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILK 317
+A L +LGP+G ++ + G + NDG T+LK
Sbjct: 62 VAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLK 97
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 40.7 bits (91), Expect = 9e-04
Identities = 24/71 (33%), Positives = 36/71 (50%)
Frame = +1
Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAA 507
VE+ KL+ Q A +D GDGTT VVLA + + ++ G +P+ I G E A
Sbjct: 117 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 176
Query: 508 RALTHLDSVSE 540
+ L +S+
Sbjct: 177 ALVNELKLMSK 187
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 120 RPFIILRDQDRQKRLTGTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTND 299
RP I+ ++ GT I+ ++A + +LGP+G ++ S G + ND
Sbjct: 45 RPAIVCAAKELHFNKDGT-TIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVND 103
Query: 300 GATILK 317
G T+ +
Sbjct: 104 GVTVAR 109
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 35.1 bits (77), Expect = 0.044
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 168 GTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILK 317
G A + +Q ++A ++ ++GP+G ++ SS G +T DG T+ K
Sbjct: 39 GIGARAAMLQGVSEVAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAK 88
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 168 GTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILK 317
G +A ++ +A ++ ++GP+G ++ S G VT DG T+ K
Sbjct: 40 GVEARALMLRGVEDLADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAK 89
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 30.7 bits (66), Expect = 0.95
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 168 GTDAIKSHIQAXRQIASTLRTSLGPRGS*KLMVSSDGDVTVTNDGATILK 317
G +A ++ +A ++ ++GP+G ++ S G VT DG T+ K
Sbjct: 39 GVEARALMLKGVEDLADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAK 88
>At5g16490.1 68418.m01927 p21-rho-binding domain-containing protein
contains Pfam PF00786: P21-Rho-binding domain
Length = 153
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 197 GXPTNCKHSSHISWSPRVLKAYG 265
G PTN KH SHI W + A G
Sbjct: 100 GVPTNVKHVSHIGWESGLTAATG 122
>At3g45190.1 68416.m04877 SIT4 phosphatase-associated family protein
contains Pfam profile: PF04499 SIT4
phosphatase-associated protein
Length = 830
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +1
Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLE-QASNLLDKGIHPIRIADGYEMAA 504
+ HQ+ +++ +S++DEI D L G +++ + +L P A G +
Sbjct: 380 LHHQVESIILSCLESKNDEIVDHLLRECDLIGKIIKTEKQPILSGDKQPTLAAAGKQAPR 439
Query: 505 ARALTHLDSVSEAFPVNKNTRGNLIKVXM 591
+ H+ +S V +T N IK +
Sbjct: 440 VGNVGHISRISNKL-VQLSTNSNQIKTLL 467
>At1g55545.1 68414.m06357 nucleoporin-related similar to nucleoporin
CAN [Xenopus laevis] gi|5764080|emb|CAB53357
Length = 824
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 328 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQAS--NLLDKGIHP 471
+E + LVQ+ +S D +I DG+T +V L+ + L S +L+ G+ P
Sbjct: 263 IEGREENYLVQVIRSPDGKISDGSTNLVALSFSDLFPCSMDDLVPVGVGP 312
>At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly similar
to GB:O22456, MADS-box protein, Location of EST
gb|H37053
Length = 251
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Frame = -2
Query: 484 RLYESDGYLCPTDLRLAQ------GVHQQEQQPLWYHHQ--FRHLDSEPIAQVVYQ 341
RL +DGY P L Q G H +QQ H Q F+ L+ EPI Q+ YQ
Sbjct: 172 RLRLADGYQMPLQLNPNQEEVDHYGRHHHQQQQ---HSQAFFQPLECEPILQIGYQ 224
>At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly similar
to GB:O22456, MADS-box protein, Location of EST
gb|H37053
Length = 250
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Frame = -2
Query: 484 RLYESDGYLCPTDLRLAQ------GVHQQEQQPLWYHHQ--FRHLDSEPIAQVVYQ 341
RL +DGY P L Q G H +QQ H Q F+ L+ EPI Q+ YQ
Sbjct: 171 RLRLADGYQMPLQLNPNQEEVDHYGRHHHQQQQ---HSQAFFQPLECEPILQIGYQ 223
>At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 946
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 283 TSPSDDTISFQDPRGPRDVRRVLAICR 203
T P DD F DP P D R V+ + +
Sbjct: 3 TPPPDDMFGFDDPFSPSDSREVVDLTK 29
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,602
Number of Sequences: 28952
Number of extensions: 334065
Number of successful extensions: 791
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -