Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060355.seq
(667 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 245 9e-64
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 140 3e-32
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 130 3e-29
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 125 8e-28
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 120 2e-26
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 120 4e-26
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 115 9e-25
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 112 6e-24
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 109 4e-23
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 106 4e-22
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 105 1e-21
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 104 2e-21
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 77 4e-13
UniRef50_Q5BRV7 Cluster: SJCHGC07245 protein; n=1; Schistosoma j... 37 0.50
UniRef50_Q0LDD2 Cluster: Putative uncharacterized protein precur... 34 3.5
UniRef50_Q96TV0 Cluster: Mig1 protein; n=1; Debaryomyces occiden... 33 4.7
UniRef50_A7BV58 Cluster: Putative uncharacterized protein; n=1; ... 33 8.2
UniRef50_A5G2F1 Cluster: Putative uncharacterized protein precur... 33 8.2
UniRef50_A5BNC6 Cluster: Putative uncharacterized protein; n=2; ... 33 8.2
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 245 bits (599), Expect = 9e-64
Identities = 116/136 (85%), Positives = 120/136 (88%)
Frame = +2
Query: 251 QTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSA 430
+TVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSA
Sbjct: 1254 KTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSA 1313
Query: 431 SIAKRLRFRPSFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVECINLNEY 610
SIAKRLRFRPSFLPYRLSPSDEVLGTF F KRHPNHKVPFQPDLFVECINLNEY
Sbjct: 1314 SIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEY 1373
Query: 611 FTAFPTRLKPXIQANA 658
+ + + IQANA
Sbjct: 1374 -SQLSNKTQAVIQANA 1388
Score = 180 bits (438), Expect = 3e-44
Identities = 101/169 (59%), Positives = 110/169 (65%), Gaps = 10/169 (5%)
Frame = +3
Query: 9 APRSTSAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKV 188
APRSTSAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKV
Sbjct: 1173 APRSTSAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKV 1232
Query: 189 DISSVEPTDTAIEPVYPGCDYKLWQL**WNPGTPTPLKSATRGSSPINF--------HGS 344
DISS EPTDTAIEPVYPGCDYK P P L+ +G F +G+
Sbjct: 1233 DISSAEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGA 1292
Query: 345 ISLMRMAPKPSAL*HPNM--TRNMTRLYFRPPLPKDSVSDPPSFLTDFL 485
+L +APK + P + RL FRP +S L FL
Sbjct: 1293 QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFL 1341
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 140 bits (339), Expect = 3e-32
Identities = 67/136 (49%), Positives = 90/136 (66%)
Frame = +2
Query: 251 QTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSA 430
+++A+L + P D +S E +GE SNQFP +D P+E GAQT S++AP H+SK+DPTLL A
Sbjct: 1284 ESLASLFLPPTDAESKETYFRGEMSNQFPHLDKPFELGAQTSSLLAPLHNSKHDPTLLPA 1343
Query: 431 SIAKRLRFRPSFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVECINLNEY 610
SI KRLRFR S PY ++P DE+LG+ + + R P PF PDL+ ECINLNE
Sbjct: 1344 SIGKRLRFRHSEAPYVIAPRDEILGSLLYEAWCRAYHRSPRDVEPFDPDLYAECINLNE- 1402
Query: 611 FTAFPTRLKPXIQANA 658
F ++ + I ANA
Sbjct: 1403 FAQLSSKTQATIMANA 1418
Score = 62.1 bits (144), Expect = 1e-08
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Frame = +3
Query: 15 RSTSAKPLPANDTSDIII--FAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKV 188
R+ A PL + D+I+ AP L D ++A P++ TH LPETRRPLHFDIPS+
Sbjct: 1203 RARDAPPLGPDYVGDVILDSSAPILGDGSANA-PQVSTHFLPETRRPLHFDIPSARHQVA 1261
Query: 189 DIS-SVEPTDTAIEPVYPG 242
D + + + AIEPVYPG
Sbjct: 1262 DHPLAPDHSACAIEPVYPG 1280
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 130 bits (314), Expect = 3e-29
Identities = 64/135 (47%), Positives = 82/135 (60%)
Frame = +2
Query: 254 TVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSAS 433
++AA + DP + EI HK + SNQFPW D P+ Q S+I+ KH +DPTLL AS
Sbjct: 1349 SLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDPTLLPAS 1408
Query: 434 IAKRLRFRPSFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVECINLNEYF 613
I KRLRFRPS P++++ D VLG FH R PN VPF P+LF ECI+LNEY
Sbjct: 1409 INKRLRFRPSDSPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAECISLNEY- 1467
Query: 614 TAFPTRLKPXIQANA 658
++ + I ANA
Sbjct: 1468 AQLSSKTQSTIVANA 1482
Score = 55.6 bits (128), Expect = 1e-06
Identities = 29/80 (36%), Positives = 39/80 (48%)
Frame = +3
Query: 3 HEAPRSTSAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPT 182
H +P +P + D + P L D RLDTH LP +R PLHFD+P ++
Sbjct: 1267 HRSPNFHLPPHIPLSYDRDFVTVNPTLPDQGPET--RLDTHFLPPSRLPLHFDLPPAITP 1324
Query: 183 KVDISSVEPTDTAIEPVYPG 242
+SV+P PVYPG
Sbjct: 1325 PPVSTSVDPPQAKASPVYPG 1344
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 125 bits (302), Expect = 8e-28
Identities = 63/137 (45%), Positives = 82/137 (59%)
Frame = +2
Query: 251 QTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSA 430
+ + A + DP EI + + SNQFP VD Y AQ ++++AP HDSK+DPTLL+A
Sbjct: 1325 ENLVAHFLPAHDPTDREIHWRRQLSNQFPHVDKEYHLAAQPMTLLAPIHDSKHDPTLLAA 1384
Query: 431 SIAKRLRFRPSFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVECINLNEY 610
SI KRLRFRPS PYR+SP DE+LG + R P PF LFVECI+LNE
Sbjct: 1385 SIQKRLRFRPSASPYRISPRDELLGQLLYESLCRAYHRSPTTTHPFDEALFVECIDLNE- 1443
Query: 611 FTAFPTRLKPXIQANAK 661
F ++ + I NA+
Sbjct: 1444 FAQLTSKTQAVIMGNAR 1460
Score = 68.5 bits (160), Expect = 1e-10
Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +3
Query: 15 RSTSAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLP-TKVD 191
RS A + +D SD++ +AP + PR+DT LPETRRPLHFD+PS P
Sbjct: 1245 RSRFAAAVKPSDRSDVLSWAPIAVGDGETNAPRIDTSFLPETRRPLHFDLPSFRPQAPPP 1304
Query: 192 ISSVEPTDTAIEPVYPG 242
S P+ TA EPVYPG
Sbjct: 1305 PSDPAPSGTAFEPVYPG 1321
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 120 bits (290), Expect = 2e-26
Identities = 65/137 (47%), Positives = 83/137 (60%), Gaps = 1/137 (0%)
Frame = +2
Query: 251 QTVAALMMEPRDPDSLEIRHKGEFSNQFP-WVDLPYENGAQTLSVIAPKHDSKYDPTLLS 427
+ +AA + DP+ EI H+GEFS QFP ++ + AQ+ ++IA KHDSK DPTLL
Sbjct: 1280 ENLAAHFLPAHDPEIKEILHRGEFSAQFPILLNQDFSLSAQSSTLIAAKHDSKRDPTLLV 1339
Query: 428 ASIAKRLRFRPSFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVECINLNE 607
ASI KRL FRPS Y+LS D++LG +H + RHP VPF LF ECIN+NE
Sbjct: 1340 ASITKRLCFRPSDSSYQLSSKDQILGLTLYHSWCRAYNRHPQAVVPFDELLFAECININE 1399
Query: 608 YFTAFPTRLKPXIQANA 658
F + K I ANA
Sbjct: 1400 -FAQSSNKTKSTIIANA 1415
Score = 37.9 bits (84), Expect = 0.22
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +3
Query: 108 PRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPG 242
P +D LP RRPLH ++ S++ + S T AI VYPG
Sbjct: 1232 PEVDDTFLPTWRRPLHRNLASAVHSNCPAQSTHVTPAAITAVYPG 1276
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 120 bits (288), Expect = 4e-26
Identities = 61/137 (44%), Positives = 79/137 (57%)
Frame = +2
Query: 251 QTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSA 430
+ +AA + DP EI +G+ SNQFP +D + AQ +S++A H K DPTLL A
Sbjct: 1463 ENLAAHFLPAHDPTDREIYWQGQLSNQFPHMDKEFHLAAQPMSLLAAIHQEKQDPTLLPA 1522
Query: 431 SIAKRLRFRPSFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVECINLNEY 610
SI KRLRFRPS PY+++P DE+LG F R P H F P LF ECINLNE
Sbjct: 1523 SIQKRLRFRPSDRPYQITPKDEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAECINLNE- 1581
Query: 611 FTAFPTRLKPXIQANAK 661
F ++ + I NA+
Sbjct: 1582 FAQLSSKTQATIMGNAR 1598
Score = 59.3 bits (137), Expect = 8e-08
Identities = 27/46 (58%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Frame = +3
Query: 108 PRLDTHHLPETRRPLHFDIPSSLP-TKVDISSVEPTDTAIEPVYPG 242
P++ TH LPETRRPLH+DIPS++P + S EPT EPVYPG
Sbjct: 1414 PQVSTHFLPETRRPLHWDIPSAIPESATRPDSTEPTTCHPEPVYPG 1459
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 115 bits (277), Expect = 9e-25
Identities = 55/120 (45%), Positives = 74/120 (61%)
Frame = +2
Query: 251 QTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSA 430
+ +AA + DPD E+ + SNQFP++D P+E Q S++AP H DPTLL
Sbjct: 1344 ENLAAFFLPAHDPDLKEVLINDQKSNQFPYLDAPFELSCQPSSLLAPIHKPASDPTLLPG 1403
Query: 431 SIAKRLRFRPSFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVECINLNEY 610
SI KRLRFR S PY ++PSD++LG F R+PN +PFQP+LF ECI +N+Y
Sbjct: 1404 SIKKRLRFRASSSPYSITPSDQLLGQHLFSSLCLAYGRNPNSVLPFQPELFSECICINDY 1463
Score = 47.2 bits (107), Expect = 4e-04
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 36 LPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPT- 212
+P N + D+++ P L L + PRL+ HLP TR PLH D+ ++P+ SSV+
Sbjct: 1273 IPTNHSLDVLVSNPVL--LGETLDPRLEVLHLPPTRLPLHLDLLPTVPSSSSFSSVDHLF 1330
Query: 213 DTAIEPVYPGCDYK 254
T I P G ++
Sbjct: 1331 PTPISPAICGYTFE 1344
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 112 bits (270), Expect = 6e-24
Identities = 55/135 (40%), Positives = 82/135 (60%)
Frame = +2
Query: 254 TVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSAS 433
T+AA + DP+ EI K + S QFPW++L + QT S+I+ +H D TLL AS
Sbjct: 1252 TLAAHFLPAHDPEVKEIELKDQTSQQFPWLNLDFHISCQTSSLISARHQPGSDSTLLPAS 1311
Query: 434 IAKRLRFRPSFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVECINLNEYF 613
+ KRLRFRP+ PY+++PSD LG + + + +R PN ++PF LF+ECI +N+Y
Sbjct: 1312 LHKRLRFRPTAAPYQITPSDSFLGNCLYRSWCQVYRRDPNVRLPFNEALFLECIAVNDY- 1370
Query: 614 TAFPTRLKPXIQANA 658
++ + I ANA
Sbjct: 1371 AQLSSKTQATIVANA 1385
Score = 42.7 bits (96), Expect = 0.008
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +3
Query: 9 APRSTSAKP-LPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTK 185
AP + P +P N + D+I+ L+ S RL HLP TR LH DI + P+
Sbjct: 1170 APPNLPCPPHIPTNYSKDVIVNNQALYG--ESLERRLSVLHLPPTRMTLHSDINITAPSS 1227
Query: 186 VDIS-SVEPTDTAIEPVYPGCDY 251
S EP + VYPG D+
Sbjct: 1228 SSFQPSDEPVPSDHTAVYPGFDF 1250
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 109 bits (263), Expect = 4e-23
Identities = 55/137 (40%), Positives = 78/137 (56%)
Frame = +2
Query: 251 QTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSA 430
+ +AA + DPD E+ ++ + S+QFP++D P+ Q S+IA H D TLL
Sbjct: 1247 ENLAAFFLPAHDPDLKEMLYRDDASSQFPYLDSPFLLSCQPSSLIAAIHKPATDSTLLPL 1306
Query: 431 SIAKRLRFRPSFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVECINLNEY 610
S+ KRLRFRPS PY +P+D +LG F RHP+ +PF P LF ECI +N+Y
Sbjct: 1307 SVNKRLRFRPSTSPYCFTPNDFILGEHLFQSLCSVYNRHPSESIPFDPVLFAECICINDY 1366
Query: 611 FTAFPTRLKPXIQANAK 661
++ K I ANA+
Sbjct: 1367 -AQLSSKTKATIVANAE 1382
Score = 34.7 bits (76), Expect = 2.0
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 27 AKP--LPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISS 200
AKP + + D++ F+ +F S+ RLD HLP TR L D+ S LP+ S
Sbjct: 1171 AKPPHVSVDYNGDVVHFSSSVFG--SNEERRLDVLHLPPTRLILQSDLVSGLPSDPSTSL 1228
Query: 201 VEPT-DTAIEPVYP 239
+ T P YP
Sbjct: 1229 CDAIFGTPFTPAYP 1242
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 106 bits (255), Expect = 4e-22
Identities = 53/120 (44%), Positives = 68/120 (56%)
Frame = +2
Query: 251 QTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSA 430
+ +AA + DP+ E+ + + S QFPW D P+ Q S+IA KH DPTLL
Sbjct: 1378 ENLAAFFLPAHDPELKEVTRRDQTSAQFPWFDRPFSLSCQPSSLIAAKHSPSQDPTLLPF 1437
Query: 431 SIAKRLRFRPSFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVECINLNEY 610
SI KRLRFR S P+ LS D +LG F + +R+P H PF P LF ECI LN+Y
Sbjct: 1438 SIPKRLRFRKSDNPHVLSAIDVLLGNQLFFNLCKAYRRNPTHVGPFNPALFAECIALNDY 1497
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 36 LPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFD-IPSSLPTKVDISSVEPT 212
+P + + D ++ P +F Q A PRLDTH LP TR PL + +P+ L +
Sbjct: 1308 IPTSYSQDFVVSNP-IF--QGQADPRLDTHFLPPTRLPLQSELLPAQLSQTTKPTDSFTN 1364
Query: 213 DTAIEPVYPGCDYK 254
+T PVYPG +++
Sbjct: 1365 NTPFTPVYPGENFE 1378
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 105 bits (251), Expect = 1e-21
Identities = 55/136 (40%), Positives = 76/136 (55%)
Frame = +2
Query: 251 QTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSA 430
+ +AA + DPD E+ + S QFP++D PY Q S++A H DPTLL
Sbjct: 1274 EELAAHFLPAHDPDLKEVTVGDQTSQQFPYLDQPYTLSCQPSSLLAASHKPASDPTLLIF 1333
Query: 431 SIAKRLRFRPSFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVECINLNEY 610
SI+KRLRFR S PY +P+D +LG + + + R PN +PF P LF ECI LNEY
Sbjct: 1334 SISKRLRFRASSSPYAFTPNDLILGHLLYTNWCKAFGRCPNSTIPFNPALFAECICLNEY 1393
Query: 611 FTAFPTRLKPXIQANA 658
++ + I +NA
Sbjct: 1394 -AQLSSKTQATIVSNA 1408
Score = 40.3 bits (90), Expect = 0.041
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 36 LPANDTSDIIIFAPELFDLQSSAIP--RLDTHHLPETRRPLHFDIPSSLPTKVDISSVEP 209
+P + + D+I+ + +S P RL T HLP TR PLHFD+ S P+ V SS
Sbjct: 1204 IPTSHSKDVIL----AHGIVASNAPERRLTTLHLPPTRLPLHFDLESCNPSTVSTSSTSN 1259
Query: 210 TDTAIEPVYPG 242
++ + G
Sbjct: 1260 SEVPFTHAFLG 1270
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 104 bits (250), Expect = 2e-21
Identities = 55/136 (40%), Positives = 76/136 (55%)
Frame = +2
Query: 251 QTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSA 430
+ +A + DP LEI + +SNQFP+++ P L+++AP H+ K DPTLL A
Sbjct: 1460 EALARTFLAATDPLELEIFFRNNWSNQFPFINRPDTVACNPLTLVAPTHNQKQDPTLLHA 1519
Query: 431 SIAKRLRFRPSFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVECINLNEY 610
S+AKRLRFR S PY ++ D+ LG +H R P VPF P LF CI N+
Sbjct: 1520 SLAKRLRFRDSTAPYTITAKDQALGYILYHSLQRAYCRSP-EPVPFDPVLFASCIAEND- 1577
Query: 611 FTAFPTRLKPXIQANA 658
F ++ + IQANA
Sbjct: 1578 FAQLTSKTQATIQANA 1593
Score = 35.1 bits (77), Expect = 1.5
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 108 PRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCD 248
PR++ + ETR PL ++ +LP++ + S + E VYPG D
Sbjct: 1412 PRVNPTFVAETRLPLQSELAPTLPSQPEPSPTYHSPATFETVYPGVD 1458
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 77.0 bits (181), Expect = 4e-13
Identities = 38/80 (47%), Positives = 49/80 (61%)
Frame = +2
Query: 416 TLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVECI 595
T L ASI KRLRFRPS PYR++ DE+LG+ F + + R P+ VPF +LF ECI
Sbjct: 1412 TFLPASIGKRLRFRPSSAPYRITSKDEILGSLLFDAHCTAMLRSPSASVPFDENLFAECI 1471
Query: 596 NLNEYFTAFPTRLKPXIQAN 655
LNE F ++ + I AN
Sbjct: 1472 ALNE-FAQLSSKTQAIIMAN 1490
Score = 70.5 bits (165), Expect = 3e-11
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Frame = +3
Query: 30 KPLPANDTSDIII-FAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVE 206
KPL +D D+++ AP + S P++ TH LPETRRPLHFD+ S++P S V+
Sbjct: 1331 KPLAPSDLPDLLVPEAPVILGSGESNAPQVSTHFLPETRRPLHFDVASAVPEPAKPSGVD 1390
Query: 207 PTDTA-IEPVYPG 242
P D A I PVYPG
Sbjct: 1391 PLDLASITPVYPG 1403
>UniRef50_Q5BRV7 Cluster: SJCHGC07245 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC07245 protein - Schistosoma
japonicum (Blood fluke)
Length = 82
Score = 36.7 bits (81), Expect = 0.50
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +3
Query: 81 LFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDI 194
LF+L +S IP +PE+ PL F + S+ PTKVD+
Sbjct: 8 LFNLVTSLIPESSLSKIPESPMPLIFGLSSNWPTKVDL 45
>UniRef50_Q0LDD2 Cluster: Putative uncharacterized protein
precursor; n=1; Herpetosiphon aurantiacus ATCC
23779|Rep: Putative uncharacterized protein precursor -
Herpetosiphon aurantiacus ATCC 23779
Length = 1446
Score = 33.9 bits (74), Expect = 3.5
Identities = 25/83 (30%), Positives = 32/83 (38%)
Frame = +3
Query: 132 PETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKLWQL**WNPGTPTPLKSAT 311
P + + D+PS L ++ PT PV P D W P P P +A
Sbjct: 217 PAPKPSANADVPSWLQEPALPAAPAPT-----PVAPSADVPSWLQEPALPADPAPTPAAP 271
Query: 312 RGSSPINFHGSISLMRMAPKPSA 380
P GS+ APKPSA
Sbjct: 272 SADVPSWLQGSVETTPPAPKPSA 294
Score = 33.5 bits (73), Expect = 4.7
Identities = 46/159 (28%), Positives = 61/159 (38%), Gaps = 2/159 (1%)
Frame = +3
Query: 9 APRSTSAKPLPANDTSDIIIFAPE-LFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTK 185
AP + +PLP S+ + P L DLQS + P P ++ D+PS L
Sbjct: 114 APALPADEPLPNAPRSEQPL--PNWLSDLQSGSTP-------PPPTPVVNADVPSWLQ-- 162
Query: 186 VDISSVEPTDTAIEPVYPGCDYKLWQL**WNPGTPTPLKSATRGSSPINFHGSISLMRMA 365
SVE T A +P D W P P P A P GS+ A
Sbjct: 163 ---GSVETTPPAPKPS-ANADVPSWLQEPALPAAPAPTPVAPSADVPSWLQGSVETAPPA 218
Query: 366 PKPSA-L*HPNMTRNMTRLYFRPPLPKDSVSDPPSFLTD 479
PKPSA P+ + P P +D PS+L +
Sbjct: 219 PKPSANADVPSWLQEPALPAAPAPTPVAPSADVPSWLQE 257
>UniRef50_Q96TV0 Cluster: Mig1 protein; n=1; Debaryomyces
occidentalis|Rep: Mig1 protein - Debaryomyces
occidentalis (Yeast) (Schwanniomyces occidentalis)
Length = 458
Score = 33.5 bits (73), Expect = 4.7
Identities = 26/75 (34%), Positives = 35/75 (46%)
Frame = +3
Query: 246 DYKLWQL**WNPGTPTPLKSATRGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYF 425
DY +L P +PTP KS T +SPI S + P SA N + N+T L+
Sbjct: 309 DYVKQRLKRSRPNSPTPTKSFTLPNSPILGLSSTN----TPIISA---NNSSTNLTSLFM 361
Query: 426 RPPLPKDSVSDPPSF 470
P + S PPS+
Sbjct: 362 TPAIRSTSYEQPPSY 376
>UniRef50_A7BV58 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
Beggiatoa sp. PS
Length = 402
Score = 32.7 bits (71), Expect = 8.2
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 51 TSDIIIFAPELFDLQSSAIPRLDTHHLP-ETRRPLHFDIPSSLPTKVDISSVEPTDT 218
TS + P + + + ++P+ D +P E +P+ IP+++PTK +++ E T T
Sbjct: 81 TSPPLEIVPAITETSNRSVPKTDDISVPTEKSKPVDTKIPATVPTKSIVATTELTAT 137
>UniRef50_A5G2F1 Cluster: Putative uncharacterized protein
precursor; n=1; Acidiphilium cryptum JF-5|Rep: Putative
uncharacterized protein precursor - Acidiphilium cryptum
(strain JF-5)
Length = 214
Score = 32.7 bits (71), Expect = 8.2
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 24 SAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHL 131
SA LP N+T D+II AP L L + + R D +L
Sbjct: 85 SALDLPKNETVDVIITAPSLAALTTKGLVRADVRNL 120
>UniRef50_A5BNC6 Cluster: Putative uncharacterized protein; n=2;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 1272
Score = 32.7 bits (71), Expect = 8.2
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 63 IIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPS-SLPTKVDISSVEPTDTAIEPVYP 239
+IF F QSS+ P + HLP + P + PS S P+ +SS T +I P+ P
Sbjct: 732 VIFHESSFPFQSSSXPSSPSPHLPSS-TPALINSPSLSAPSSPAVSSPIITSNSIPPLIP 790
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 721,971,286
Number of Sequences: 1657284
Number of extensions: 17238400
Number of successful extensions: 46396
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 44280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46356
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -