Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060355.seq
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.1
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 27 1.8
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 27 2.4
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 4.2
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 4.2
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 5.6
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 26 5.6
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 26 5.6
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos... 26 5.6
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 26 5.6
SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.6
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 9.8
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.8
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 9.8
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 9.8
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 9.8
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 218 RHRTCLSRLRL-QTVAALMMEPRDPDSLEIRHKGEFSNQF 334
R ++ L + ++ Q VA+ + E P LEIR + EFS F
Sbjct: 150 RRKSLLPKPKMFQRVASALYEESSPLELEIRSESEFSKMF 189
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 51 TSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIP 167
+S + + E F LQ + RL H P T R H D P
Sbjct: 128 SSSAVDWLSERFGLQMDQLSRLAGHSEPRTHRGTHPDYP 166
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 522 SMSSL*NDIPIIKFLFSPTFSLNVSISMST 611
++S+ ND+ ++K L P F+LNV T
Sbjct: 119 TVSAKINDVEVVKVLLEPDFNLNVDAICET 148
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = -2
Query: 471 GRKEGRKRSLLAMEAESK-VGSYFESCLGAITLRVWAPFS*GRSTHGN*LENSP 313
G G +L + S GSY S GA AP S R N L N P
Sbjct: 106 GNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAHAPHSQNRRRRSNHLNNPP 159
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 276 NPGTPTPLKSATRGSSPINF 335
+PGTPT LKS + SP +F
Sbjct: 344 DPGTPTSLKSPSLRKSPSSF 363
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 254 TVAALMMEPRDPDSLEIRHKGEFSNQFPWVDL 349
T+A L++EPRD L + KG Q PW +
Sbjct: 264 TIATLVLEPRD---LIVYRKGFALLQIPWTSV 292
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 165 EYRNGEDDGFLEDDECQVSGWLRTGGQKVQV 73
E +NG+ +G ++D E + W R +K+QV
Sbjct: 67 EVKNGKSNGIIQDWESTLYTWERGLKEKLQV 97
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 218 GVCRFNTTNVHFGRERGRNIEME 150
G R+ + N H GRE+ R ++E
Sbjct: 183 GTARYMSINTHLGREQSRRDDLE 205
>SPBC1347.06c |cki1||serine/threonine protein kinase
Cki1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 218 GVCRFNTTNVHFGRERGRNIEME 150
G R+ + N H GRE+ R ++E
Sbjct: 180 GTARYMSINTHLGREQSRRDDLE 202
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 218 GVCRFNTTNVHFGRERGRNIEME 150
G R+ + N H GRE+ R ++E
Sbjct: 180 GTARYMSINTHLGREQSRRDDLE 202
>SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 108
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 397 MFGCYNAEGLGAILIREI 344
+FGC++A GLG L EI
Sbjct: 64 LFGCWSANGLGIALAYEI 81
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 103 AEDWRSKSSGAKI-IMSEVSLAGSGLADVERGASC 2
A+ W + G+ I IMS +S+ G G A R SC
Sbjct: 1137 AQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSC 1171
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 297 LKSATRGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTR 416
+ +A + +PIN + S+++ PKPSA +PN+ TR
Sbjct: 7 IPTAIQIQNPINNNVSVTISDQLPKPSAN-NPNLLSVDTR 45
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 114 LDTHHLPETRRPLHFDIPSSLPTKVDISSVE 206
L HHL + PL DIP + KVD+ S+E
Sbjct: 490 LRDHHLFSSCFPLA-DIPRNAAGKVDLKSIE 519
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 9.8
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 456 DPPSFLT-DFLLLTKSLAHSXFISMSSL*NDIPIIKFLFSPTFSLNVSISMSTS 614
D SFL +L+ S A S + S SSL N+I +K L S S + + M S
Sbjct: 426 DTSSFLKRQTEMLSHSPASSHWASFSSLENEIANLKNLLSKMKSTELFLDMEFS 479
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 503 QGLRQKEKVCKEGRRVGNGVFWQWRPKVK 417
QG Q+ K KEG + + QWR VK
Sbjct: 914 QGDTQEVKSKKEGMAIVRDIMRQWRSNVK 942
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,362
Number of Sequences: 5004
Number of extensions: 68663
Number of successful extensions: 220
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -