Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060355.seq
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186...    32   0.36 
03_02_0116 - 5717448-5717792                                           29   3.3  
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311...    29   4.4  
07_03_0138 - 14140653-14140988                                         28   5.8  
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665...    28   5.8  
06_01_0118 + 921262-921638,921760-921857,921967-922076                 28   5.8  
05_06_0147 + 25986259-25987701                                         28   5.8  
04_04_1048 + 30411344-30411699,30411756-30411895,30412631-304126...    28   5.8  
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621     28   5.8  
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398...    28   5.8  
09_02_0411 + 8721855-8722232                                           28   7.7  
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501...    28   7.7  

>03_02_0874 +
           12017069-12018051,12018137-12018316,12018421-12018600,
           12018718-12018797,12018999-12019259,12019360-12019474,
           12019631-12019855,12020840-12020849
          Length = 677

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 327 INFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSDP--PSFLTDFLL 488
           I  HG   ++R+A  P AL H  M +    L   PP P  S S P  P+  + FLL
Sbjct: 31  IQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSSPTVPAAHSPFLL 86


>03_02_0116 - 5717448-5717792
          Length = 114

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 592 TFNEKVGLKRNFMIGMSFYRLDIEMKXECAKDFVRRRKSVRKEG 461
           T N   G ++ F  G+++YRL +E        ++R +  V +EG
Sbjct: 59  TLNTVDGAEKRFEAGVNYYRLTLEASSRVVAKYLRFQAVVYEEG 102


>05_03_0645 +
           16529635-16529794,16530188-16530312,16531100-16531173,
           16531961-16532006,16532638-16532730,16534429-16535886
          Length = 651

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
 Frame = +3

Query: 282 GTPTPLKS----ATRGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKD- 446
           G P  L S    A +G++ +    + S   MAP PSA   P + R +  L   PP P   
Sbjct: 311 GPPVALSSSAQGAVQGTAGLMASSATSAAAMAPPPSAPSLPEVERVILELLSLPPSPLQP 370

Query: 447 --SVSDPPSFLTDFLLLTKSL 503
             S S    F+ + LLL   L
Sbjct: 371 AMSGSTATCFICNKLLLPTDL 391


>07_03_0138 - 14140653-14140988
          Length = 111

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 440 WQWRPKVKSGHISSHVWVL*R*GFGRHSHKGDRPMEIDWRTPPCGGFQGSRGPG 279
           W+WR       +S+   V  + G G+   +G+R     WR    GG +G  G G
Sbjct: 21  WRWRWMAAVERVSAAAVV--QAGVGKVGREGERQRGRQWRGRGSGGEEGVEGGG 72


>07_02_0028 +
           11964941-11964991,11965259-11966101,11966249-11966560,
           11966640-11967073,11967500-11967941
          Length = 693

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 12  PRSTSAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLH 155
           P++T + P   +++   II+AP L        P +  +H P+T   LH
Sbjct: 401 PQTTESSPPRQSNSGKDIIYAPGLIPNGGGLSPPVIGYHAPKTSTLLH 448


>06_01_0118 + 921262-921638,921760-921857,921967-922076
          Length = 194

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 216 TAIEPVYPGCDYKLWQL**WNPG 284
           T + P++PGCDY+ W +    PG
Sbjct: 81  TEMAPLFPGCDYEHWLIVMDKPG 103


>05_06_0147 + 25986259-25987701
          Length = 480

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 27  AKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRP 149
           A P P   T+D    +    D  ++A P +  HHLP    P
Sbjct: 40  AVPTPPASTADFFSSSAPAVDRMAAANPSISFHHLPPPEYP 80


>04_04_1048 +
           30411344-30411699,30411756-30411895,30412631-30412696,
           30413177-30413328
          Length = 237

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 216 TAIEPVYPGCDYKLWQL**WNPG 284
           T + P++PGCDY+ W +    PG
Sbjct: 74  TEMAPLFPGCDYEHWLIVMDKPG 96


>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
          Length = 388

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +3

Query: 246 DYKLWQL**WNPGTPTPLKSATRGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYF 425
           D+ LW +      TP   ++ T  + P   H    L +  P P A  H   T++ T    
Sbjct: 141 DWVLWDVEIVQVLTPGHDRAPTSAAPPSPAHAP-ELKKPPPPPEA--HHRPTKSYTGHPP 197

Query: 426 RPPLPKDSVSDPP 464
            PPL KD+   PP
Sbjct: 198 PPPLEKDAPPQPP 210


>03_02_0875 +
           12038365-12039329,12039417-12039593,12039651-12039893,
           12040045-12040124,12040242-12040508,12040599-12040710,
           12040757-12041071,12041357-12041366
          Length = 722

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 327 INFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSDP--PSFLTDFLL 488
           I  HG   ++R+A  P AL H  M +    L   PP P+ + S P  P+  + FLL
Sbjct: 31  IQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPP-PQAASSSPTVPAAHSPFLL 85


>09_02_0411 + 8721855-8722232
          Length = 125

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 487 RRKSVRKEGGSETESFGNGGRK 422
           R+K  R++GG   ES G GGR+
Sbjct: 75  RKKGEREKGGRRRESTGGGGRR 96


>03_05_0923 +
           28848925-28849272,28849636-28849869,28849965-28850131,
           28850433-28850651,28850743-28850929,28851012-28851063,
           28851158-28851387,28851619-28851717,28851835-28852565,
           28853004-28853519,28854140-28854398
          Length = 1013

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 479 VCKEGRRVGNGVFWQWRPKVKSGHISSHVWVL 384
           V  EG   G G  W WR KVK   ++   WVL
Sbjct: 18  VAVEGDEAGKGRRW-WRVKVKLSTVAVVAWVL 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,110,212
Number of Sequences: 37544
Number of extensions: 521675
Number of successful extensions: 1406
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)