Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060355.seq
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          31   0.64 
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)                       30   1.9  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   30   1.9  
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_49514| Best HMM Match : Ion_trans_2 (HMM E-Value=0.0026)            28   5.9  
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_26213| Best HMM Match : CITED (HMM E-Value=2.5)                     28   5.9  
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   28   7.9  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        28   7.9  

>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
 Frame = +3

Query: 294 PLKSATRGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSDPPSFL 473
           P    T  S P +F  S S + + P  S+L    +T + +   F       SV    S L
Sbjct: 604 PSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTSSSSLSDFLTSSSSLSVFPTSSSL 663

Query: 474 -TDFLLLTKSLAHSXFISMSSL*NDIPIIKFLFSPTFSLNVSISMSTSQLFQHDSSL 641
            +DFL  T S + S F+S SSL +D      L S   SL      S+S L    +SL
Sbjct: 664 PSDFL--TSSSSPSDFLSSSSLPSDFLTSSSLLSDFLSLPSDFLTSSSSLSDFLTSL 718



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
 Frame = +3

Query: 294  PLKSATRGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSDPPSFL 473
            P    T  S P +F  S S + + P  S+L    +T + +   F       SV    S L
Sbjct: 1199 PSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTSSSSLSDFLTSSSSLSVFPTSSSL 1258

Query: 474  -TDFLLLTKSLAHSXFISMSSL*NDIPIIKFLFSPTFSLNVSISMSTSQL 620
             +DFL  T S + S F+S SSL +D      L S   SL      S+S L
Sbjct: 1259 PSDFL--TSSSSPSDFLSSSSLPSDFLTSSSLLSDFLSLPSDFLTSSSSL 1306


>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2102

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +3

Query: 24  SAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSV 203
           ++ P P++ ++ II   P +  L SSA+ +    H+    RP      SS   K   S  
Sbjct: 145 TSHPRPSDSSTSIICAGPVIAALASSALVK----HMTSPPRPSDSSTASSALVKHMASHP 200

Query: 204 EPTDTAIEPVYPG 242
            P+D++   V PG
Sbjct: 201 RPSDSSTSIVCPG 213



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +3

Query: 24  SAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSV 203
           ++ P P++ ++ I+   P +  L SSA+ +    H+    RP      SS   K   S  
Sbjct: 197 ASHPRPSDSSTSIVCPGPVIAALASSALVK----HMTSHPRPSDSSTASSALVKHMASHP 252

Query: 204 EPTDTAIEPVYPG 242
            P+D++   V PG
Sbjct: 253 RPSDSSTSIVCPG 265


>SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 147 PLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 239
           P +  I ++ PT + I++  PTD +IE  YP
Sbjct: 97  PNYLSIVTAYPTDLSIATAYPTDLSIETAYP 127



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 138 TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 239
           T  P    I ++ PT + I +  PTD +IE  YP
Sbjct: 214 TANPNDLSIVTAYPTDLRIVTAYPTDLSIETAYP 247


>SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)
          Length = 291

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 138 TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 239
           T  P    I ++ PT + I +  PTD +IE  YP
Sbjct: 44  TAYPTDLSIATAYPTDLSIVTAYPTDLSIETAYP 77



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 138 TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 239
           T  P +  I ++ PT + I++  PTD +I   YP
Sbjct: 34  TAYPNYLSIVTAYPTDLSIATAYPTDLSIVTAYP 67


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 347 LPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLG-TFXFHL 523
           +P+E G   + V       K  P     +I+ +  + P+F  Y +SP     G T    +
Sbjct: 690 VPFEEGGNAIMVKEINDALKSGPAFRGYAISPQRGYGPAFRGYAISPRQRGSGYTIPLGI 749

Query: 524 YVEPIKR 544
           YV P  R
Sbjct: 750 YVPPRSR 756


>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 9   APRSTSAKPLPANDTSDII 65
           A RSTS+ PLP +DTS++I
Sbjct: 122 AVRSTSSPPLPPDDTSEVI 140


>SB_49514| Best HMM Match : Ion_trans_2 (HMM E-Value=0.0026)
          Length = 471

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 3   HEAPRSTSAKPLPANDTSDIIIFAPELFDLQSSAIP 110
           H++PR+ S + L    T+DII   P L DL++S  P
Sbjct: 53  HKSPRNDSDRLLLETSTADIIY--PTLVDLKTSVAP 86


>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 6   EAPRSTSAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPE 137
           E PR  S+ P PA D   + +F P + D   + + R     LPE
Sbjct: 653 ECPRKLSSNP-PALDPHTLDVFTPSIADADIAGMTRTRDAGLPE 695


>SB_26213| Best HMM Match : CITED (HMM E-Value=2.5)
          Length = 172

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +2

Query: 386 APKHDSKYDPTLLSASI---AKRLRFRPSFLPYRLSPSDEVLGT 508
           AP    K D T L A +   A R R  PSF P  LSP    L T
Sbjct: 104 APGPGEKGDHTALKAGLSELAPRARSSPSFFPMALSPIPTPLAT 147


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +3

Query: 39  PANDTSDIIIFAPELFD-LQSS-AIP-RLDTHHLPETRRPLHFDIPSSLPTKVDISSVEP 209
           P N+TS  I+    L   L S+  +P  L ++    T  PL+  +P+ LP+   +S+V P
Sbjct: 276 PPNETSTEILSNETLSTGLPSNQTLPTELSSNETFSTELPLNQTLPNELPSNETLSTVAP 335

Query: 210 TDTAIEPVYP 239
           ++  I    P
Sbjct: 336 SNETISTESP 345


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = +3

Query: 357 RMAPKPSAL*HPNMTRNMTR-LYFRPPLPKDSVSDPPSFL---TDFLLLTKSLAHSXFIS 524
           R+ P  SA   PN+T NMTR       LP  SV    +F+           +++ S   +
Sbjct: 677 RLVPSSSASISPNVTINMTREANSTMILPSTSVPYNTTFIPAPNATSTAATTMSPSYVAN 736

Query: 525 MSSL*NDIPIIKFLFSPTFSLNVSISM 605
           M++L + + + + L S T   ++S S+
Sbjct: 737 MTTLDSSVSLTRSLLSTTLIPSISTSI 763


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,326,175
Number of Sequences: 59808
Number of extensions: 541365
Number of successful extensions: 1457
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)