Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060355.seq
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    29   3.9  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    29   3.9  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    29   3.9  
Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    28   6.8  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    28   6.8  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    28   6.8  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    28   6.8  
AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride ...    28   6.8  
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U41992-5|AAA83356.1|  549|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical protein
            F54G8.3 protein.
          Length = 1139

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 164  NIEMERTTGFWKMMSVKSRDG*GLEVKKFRCEN 66
            NI    T  FW + ++K  DG   EVK   C++
Sbjct: 963  NIPWFSTANFWNLFAIKGGDGRPREVKHLSCQD 995


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 174  LPTKVDISSVEPTDTAIEPVYP 239
            LPT++D +   PTD A  PVYP
Sbjct: 2525 LPTEIDAAQSLPTDDAGMPVYP 2546


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 174  LPTKVDISSVEPTDTAIEPVYP 239
            LPT++D +   PTD A  PVYP
Sbjct: 2588 LPTEIDAAQSLPTDDAGMPVYP 2609


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 174  LPTKVDISSVEPTDTAIEPVYP 239
            LPT++D +   PTD A  PVYP
Sbjct: 2588 LPTEIDAAQSLPTDDAGMPVYP 2609


>Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical
           protein F53F1.4 protein.
          Length = 105

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 317 PPCGGFQGSRGPGVPSLELPQF-VVAAGIDRFYGGVC 210
           PPCG      GP +P L+LP+F +    +  F GG C
Sbjct: 36  PPCG----CGGPSLPPLQLPRFELPRLSLPSFGGGGC 68


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 278 VPS-LELPQFVVAAGIDRFYGGVCRFNTTNVH 186
           VPS + LP FV+ A I RFYG +      ++H
Sbjct: 512 VPSGVFLPVFVLGAAIGRFYGEIIGLALEDIH 543


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 278 VPS-LELPQFVVAAGIDRFYGGVCRFNTTNVH 186
           VPS + LP FV+ A I RFYG +      ++H
Sbjct: 512 VPSGVFLPVFVLGAAIGRFYGEIIGLALEDIH 543


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 461 SFLPYRLSPSDEVLGTFXFHLYVEPIKRHPNHKVPFQPDLFVE 589
           S+ P ++SP  E    F  H  ++ +  HP  K      L +E
Sbjct: 420 SYKPQKISPKSETTVRFMLHDKIQNMYEHPQFKTDVMNPLMME 462


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 278 VPS-LELPQFVVAAGIDRFYGGVCRFNTTNVH 186
           VPS + LP FV+ A I RFYG +      ++H
Sbjct: 512 VPSGVFLPVFVLGAAIGRFYGEIIGLALEDIH 543


>AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 978

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 278 VPS-LELPQFVVAAGIDRFYGGVCRFNTTNVH 186
           VPS + LP FV+ A I RFYG +      ++H
Sbjct: 440 VPSGVFLPVFVLGAAIGRFYGEIIGLALEDIH 471


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = +3

Query: 105 IPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPV----YPGCDYKLWQL 266
           IP  + HH+ E    LHF  P  L  K   S V      + P+      GC+  +W L
Sbjct: 345 IPLREMHHIMEDYSSLHFKDPEPLYRKT--SKVMNLKELLNPIPYFLRKGCNTDMWDL 400


>U41992-5|AAA83356.1|  549|Caenorhabditis elegans Hypothetical
           protein F32E10.5 protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 174 ERKEYRN-GEDDGFLEDDECQVSGW 103
           ER +Y + G D  FLED+E + +GW
Sbjct: 277 ERNDYDDSGADSDFLEDEEEEDAGW 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,418,594
Number of Sequences: 27780
Number of extensions: 401917
Number of successful extensions: 1164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)