Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060355.seq
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    29   0.053
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.49 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.49 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.49 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.0  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 28.7 bits (61), Expect = 0.053
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 215 HRH-RTCLSRLRLQTVAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ 370
           H+H RT L       V+ L++    PD   ++++ EF  Q  W D  L Y N +Q
Sbjct: 126 HQHLRTHLRGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 180


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 257 VAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ 370
           V+ L++    PD   ++++ EF  Q  W D  L Y N +Q
Sbjct: 90  VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 129


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 257 VAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ 370
           V+ L++    PD   ++++ EF  Q  W D  L Y N +Q
Sbjct: 90  VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 129


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 257 VAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ 370
           V+ L++    PD   ++++ EF  Q  W D  L Y N +Q
Sbjct: 90  VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 129


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 424 K*SRVIFRVMFGCYN 380
           K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 424 K*SRVIFRVMFGCYN 380
           K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 424 K*SRVIFRVMFGCYN 380
           K SR++F V F C+N
Sbjct: 344 KYSRIVFPVCFVCFN 358


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 256 SL*SQPG*TGSMAVSVGSTLLMSTL 182
           S+ ++PG TG+   S G+ LL   L
Sbjct: 171 SVKAEPGSTGTTTTSTGTRLLHGIL 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,635
Number of Sequences: 438
Number of extensions: 5598
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)