Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060354.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1036 + 9021395-9021658,9024214-9024690 45 6e-05
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 45 6e-05
08_02_1304 - 26008105-26009070 36 0.040
08_02_1310 - 26037025-26038074 35 0.069
07_01_0011 - 81696-81892,83345-83621,83841-84189,84280-84644 35 0.069
08_02_1251 - 25592537-25593380,25593589-25593893 34 0.091
06_01_1008 - 7853089-7854147 34 0.091
08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546 32 0.37
08_01_0027 - 195321-195932,197206-197415 32 0.37
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 31 0.85
08_01_0797 + 7711772-7712869 31 1.1
10_08_0082 + 14713989-14714046,14714109-14714953 30 1.5
08_01_0801 - 7750548-7751708 30 2.0
07_03_0351 + 17082571-17083087,17083135-17083148 29 3.4
10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886 29 4.5
03_02_0099 - 5614007-5614233,5614725-5614998,5615086-5616179,561... 29 4.5
10_08_0129 - 15025076-15025858,15025951-15026283 28 6.0
10_08_0122 - 14982676-14983043,14983957-14985145 28 6.0
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072 28 6.0
10_08_0119 - 14952786-14953931,14954709-14954831 28 7.9
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 28 7.9
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 44.8 bits (101), Expect = 6e-05
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELAS 433
AH+++L+ SP F+ M + M ++ I+ + DVS+ LR + +MY E + ++ +
Sbjct: 83 AHRVILASRSPVFRAMLENEMEESRSGIIKIYDVSYDVLRAFVHYMYTAEALLDEQMASD 142
Query: 434 FISTAEQLQVKGLTGN-QNEESSTPSNQSRLRGQA-PGRHNKDNLL 565
+ AE+ +VK L + +S SN + + A RH+ LL
Sbjct: 143 LLVLAEKYEVKNLKAYCEKFLTSKVSNDNAITHYAFAHRHSAKQLL 188
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 44.8 bits (101), Expect = 6e-05
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 427
AHKL+LS+ S F +MF M + VF +DV A L+QFMY GE+ V EE+
Sbjct: 365 AHKLILSLWSMTFDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYSGELKVDIEEI 422
>08_02_1304 - 26008105-26009070
Length = 321
Score = 35.5 bits (78), Expect = 0.040
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQE--MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELAS 433
AH+ VL+ SP F+ + M P V L+D+ + R LL F+Y +V Q E +S
Sbjct: 167 AHRAVLAARSPVFRAELLGSMAEATMPCVTLRDIEPATFRALLHFVY---TDVLQIEGSS 223
Query: 434 FISTAEQLQ 460
ST + LQ
Sbjct: 224 STSTTDLLQ 232
>08_02_1310 - 26037025-26038074
Length = 349
Score = 34.7 bits (76), Expect = 0.069
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 257 QAHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELA 430
+AH+ VL+ SP F+ M P V L+D+ +A R +L F+Y + +ELA
Sbjct: 191 RAHRAVLAARSPVFKAALFGSMAEATAPSVALRDMDPAAFRAVLHFIYTDALPDDIDELA 250
Query: 431 SF 436
F
Sbjct: 251 GF 252
>07_01_0011 - 81696-81892,83345-83621,83841-84189,84280-84644
Length = 395
Score = 34.7 bits (76), Expect = 0.069
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +2
Query: 254 MQAHKLVLSVCSPYFQEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 424
+QAHK +L+ SP F+ F NP H ++ ++DV + ++ F+Y E+ E
Sbjct: 197 VQAHKWILAARSPVFKAQFFGPIGNPDLHTVI-VEDVEPLVFKAMVNFIYSDEL-PSIHE 254
Query: 425 LASFIST 445
LA +ST
Sbjct: 255 LAGSVST 261
>08_02_1251 - 25592537-25593380,25593589-25593893
Length = 382
Score = 34.3 bits (75), Expect = 0.091
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQEMFKMNPTQHPI--VFLKDVSHSALRDLLQFMYQGE 403
AH+ +L+VCSP F+ + + + + L D+ + LL FMY G+
Sbjct: 237 AHRALLAVCSPVFKALLLSSTAEAAACSITLNDIKPAMFEALLHFMYTGD 286
>06_01_1008 - 7853089-7854147
Length = 352
Score = 34.3 bits (75), Expect = 0.091
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQG 400
AHK++L+ SP F F M + V +KD+ S + +L F+Y G
Sbjct: 190 AHKIILAARSPVFMAEFFGPMKESSSQCVEIKDIEASVFKAMLHFIYTG 238
>08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546
Length = 290
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQ-EMF-KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNV 412
AHK+VL++ SP F+ E+F M ++ +KD+ + LL F+Y +++
Sbjct: 132 AHKVVLAMRSPVFKAELFGPMREAGAQVLPIKDIQPDVFKALLHFIYTDSLSI 184
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 254 MQAHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQ 418
++AHK +L+ CSP F+ MF + + + + D+ + L+ F+Y G + + Q
Sbjct: 119 LKAHKAILASCSPVFESMFLHDLKEKESSTININDMCLESCSALIGFIY-GTIKLDQ 174
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQ-EMF-KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEV 406
AHK+VL+ SP F+ ++F M + ++D+ S + LL FMY E+
Sbjct: 324 AHKVVLAARSPVFRAQLFGPMKDKNMKRITIEDMEASVFKALLHFMYWDEL 374
>08_01_0797 + 7711772-7712869
Length = 365
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMY 394
AHKLVL+ SP F+ F +M + +KD+ S R LL F+Y
Sbjct: 205 AHKLVLAARSPVFKAEFYGEMIERGTFSIDIKDMQPSVFRALLHFIY 251
>10_08_0082 + 14713989-14714046,14714109-14714953
Length = 300
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 254 MQAHKLVLSVCSPYFQE----MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQE 421
+ AH+ VL+ SP F+ + K T V ++D+ + LL+FMY + +E
Sbjct: 141 LAAHRCVLAARSPVFKAELYGLMKEGGTAAGAVHIEDIEPRVFKVLLRFMYTDSLPEMEE 200
Query: 422 E 424
E
Sbjct: 201 E 201
>08_01_0801 - 7750548-7751708
Length = 386
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 263 HKLVLSVCSPYFQ-EMFKM--NPTQHPIVFLKDVSHSALRDLLQFMYQGEVNV 412
HKLVL++ SP F+ E+ + P PI + D+ + R LLQF+Y + V
Sbjct: 215 HKLVLAMRSPVFKAELCGLLREPGTQPITIV-DMQPAVFRALLQFIYTDQFPV 266
>07_03_0351 + 17082571-17083087,17083135-17083148
Length = 176
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 284 ILIELIYVLAXXXSAANVTSTRSPRDSRP*KPADIFAWKLFQHSENCSS 138
+L+ L+++LA + A T P + +P + D+F +LF + N S+
Sbjct: 9 LLLLLLFLLAAATATATATGNALPPEPKPARWPDVFHARLFTNLTNHSA 57
>10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886
Length = 334
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQ-EMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 424
AH+ VL+ SP F E+F + + +V + D+ + LL+FMY + +EE
Sbjct: 174 AHRCVLAAQSPVFSAELFGPMKDSDRAGVVRIDDMEAQVFKALLRFMYTDSLPEMEEE 231
>03_02_0099 -
5614007-5614233,5614725-5614998,5615086-5616179,
5616674-5616772,5617371-5617389
Length = 570
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 407 NVKQEELASFISTAEQ--LQVKGLTGNQNEESSTPSNQSRLRGQAPGRHNK 553
N EE A +++ + L KGL Q E+ P+ +++ G++PG + K
Sbjct: 498 NSTAEEPAEAVNSKRRRRLSAKGLELQQAEKGKKPTTKNKSNGKSPGSNGK 548
>10_08_0129 - 15025076-15025858,15025951-15026283
Length = 371
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +2
Query: 260 AHKLVLSVCSPYF-QEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGE-VNVKQEE 424
AH+LVL+V SP F E F K + ++ + D+ + LL F+Y + + QEE
Sbjct: 180 AHRLVLAVRSPVFVAEHFGPMKEGVNVNDVIEINDMDAQVFKALLNFIYTDTLLEMDQEE 239
Query: 425 LAS 433
A+
Sbjct: 240 DAT 242
>10_08_0122 - 14982676-14983043,14983957-14985145
Length = 518
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +2
Query: 260 AHKLVLSVCSPYF-QEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGE-VNVKQEE 424
AH+LVL+V SP F E F K + ++ + D+ + LL F+Y + + QEE
Sbjct: 208 AHRLVLAVRSPVFVAEHFGPMKEGVNVNDVIEINDMDAQVFKALLNFIYTDTLLEMDQEE 267
Query: 425 LAS 433
A+
Sbjct: 268 DAT 270
>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
Length = 414
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 284 CSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVN-VKQEEL 427
C P + F T++P+VFL+ + + DLLQ + V+ K+ EL
Sbjct: 253 CEPRKEIFFTERNTENPLVFLRFLVSTPWGDLLQIKFSRRVHRTKRLEL 301
>10_08_0119 - 14952786-14953931,14954709-14954831
Length = 422
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQ-EMFK-MNPTQHPIVFLKDVSHSALRDLLQFMY 394
AH+LVL+ SP F+ E+FK M ++ + ++ + LL F+Y
Sbjct: 262 AHRLVLAARSPVFKAELFKPMEEGTTDVIKIDNMDAQVFKALLVFIY 308
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 302 EMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGN 481
+MF ++P++ P F + S S +RD Q+ + N++ + + Q + LTG
Sbjct: 1073 DMFLVDPSESPQDFAANTSSSGVRDDRQWCVLEQANLQGYD----SDQPRRRQARRLTGL 1128
Query: 482 QNEESSTPSNQSRLRG-QAPGRHNKDN 559
P + R G + P RH+K+N
Sbjct: 1129 PRR----PRRRGRRWGAKMPQRHSKNN 1151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,153,475
Number of Sequences: 37544
Number of extensions: 294056
Number of successful extensions: 796
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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