Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060354.seq
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 46 3e-05
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 46 3e-05
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter... 40 0.002
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai... 37 0.011
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai... 37 0.011
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 36 0.019
At5g21010.1 68418.m02497 speckle-type POZ protein-related contai... 35 0.058
At3g43700.1 68416.m04664 speckle-type POZ protein-related contai... 34 0.076
At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family pr... 30 1.6
At5g54860.1 68418.m06834 integral membrane transporter family pr... 29 3.8
At5g48510.1 68418.m05998 speckle-type POZ protein-related contai... 29 3.8
At4g04090.1 68417.m00578 speckle-type POZ protein-related contai... 29 3.8
At2g40440.1 68415.m04990 BTB/POZ domain-containing protein conta... 28 5.0
At2g39760.1 68415.m04882 speckle-type POZ protein-related contai... 28 5.0
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Frame = +2
Query: 257 QAHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 415
Q+HK++LS+ S F +MF M+ + ++L DVS A + ++ FMY GE+N++
Sbjct: 365 QSHKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFI 439
AHK++L F + + ++ L+ VS+ L LLQ++Y G + + ELA
Sbjct: 226 AHKVILQASGN-----FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPLR 280
Query: 440 STAEQLQVKGLTGNQNEES 496
+ + +V L Q EES
Sbjct: 281 DLSSKFEVMSLV-RQCEES 298
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Frame = +2
Query: 257 QAHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 415
Q+HK++LS+ S F +MF M+ + ++L DVS A + ++ FMY GE+N++
Sbjct: 365 QSHKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFI 439
AHK++L F + + ++ L+ VS+ L LLQ++Y G + + ELA
Sbjct: 226 AHKVILQASGN-----FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPLR 280
Query: 440 STAEQLQVKGLTGNQNEES 496
+ + +V L Q EES
Sbjct: 281 DLSSKFEVMSLV-RQCEES 298
>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 243
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELAS 433
AHK VL SP F+ M + M + + + DVS+ ALR + ++Y E + ++
Sbjct: 82 AHKSVLVSRSPVFKAMLENEMEESLSGTIKISDVSYDALRTFVYYLYTAEACLDEQMACD 141
Query: 434 FISTAEQLQVKGL 472
+ +E+ QVK L
Sbjct: 142 LLVMSEKYQVKHL 154
>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +2
Query: 263 HKLVLSVCSPYFQEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELAS 433
HK VL+ S F+ M + + + L D+SH L+ LL+F+Y G + + S
Sbjct: 40 HKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSGNLKAPYNQYRS 99
Query: 434 FISTAEQLQVKGL 472
A++ + L
Sbjct: 100 LYLAADKYDISYL 112
>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +2
Query: 263 HKLVLSVCSPYFQEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELAS 433
HK VL+ S F+ M + + + L D+SH L+ LL+F+Y G + + S
Sbjct: 40 HKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSGNLKAPYNQYRS 99
Query: 434 FISTAEQLQVKGL 472
A++ + L
Sbjct: 100 LYLAADKYDISYL 112
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/75 (22%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +2
Query: 254 MQAHKLVLSVCSPYFQEMFKMN-PTQHPIVFLKD-VSHSALRDLLQFMYQGEVNVKQEEL 427
++AH+++LS SP+F++ F+ + + F K+ +S+ AL L+ F Y + + +++
Sbjct: 184 IEAHRVILSARSPFFKQKFENEWKDRREVRFSKEKLSYPALCSLIHFFYSDRLEISVDDM 243
Query: 428 ASFISTAEQLQVKGL 472
+ + + + L
Sbjct: 244 EDLVRICKVCKCESL 258
>At5g21010.1 68418.m02497 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 410
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQ-EMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQ 397
AHKLVL+ SP+F+ + F + V + D+ + LLQFMY+
Sbjct: 211 AHKLVLAARSPFFKSKFFSEFEANNTEVTINDLEPKVFKALLQFMYK 257
>At3g43700.1 68416.m04664 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 415
Score = 34.3 bits (75), Expect = 0.076
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 257 QAHKLVLSVCSPYFQEMFKMNPTQ-HPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELAS 433
QAHKLVL+ S +F+ MF + + V + D+ + LL FMY+ + E L +
Sbjct: 217 QAHKLVLAARSQFFRSMFYNTLAENNSDVVISDLEPKVFKALLHFMYKDSLPGDVEPLTA 276
>At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 709
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELAS 433
AHK+ L S F+ MF V + ++ +++F+Y G +N+ +
Sbjct: 553 AHKIGLVASSDIFRAMFDGLYKERNAQNVEIPNIRWEVFELMMKFIYSGRINIAKHLAKD 612
Query: 434 FISTAEQLQVKGL 472
+ A+Q ++GL
Sbjct: 613 LLVAADQYLLEGL 625
>At5g54860.1 68418.m06834 integral membrane transporter family
protein contains 10 transmembrane domains; contains Pfam
PF03092: BT1 family; contains TIGRFAMS TIGR00788:
folate/biopterin transporter; similar to high affinity
folic acid/methotrexate transporter 5 (GI:21898554)
[Leishmania tarentolae]
Length = 491
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 446 AEQLQVKGLTGNQNEESSTPSNQSRLRGQAPGRHNKDN 559
+ + + K LT N N ++ SN R +GQ G+ N
Sbjct: 216 SNEFEEKSLTSNDNYPDTSKSNTRRRKGQKKGKKGDSN 253
>At5g48510.1 68418.m05998 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
POZ protein (SP:O43791) [Homo sapiens]
Length = 224
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Frame = +2
Query: 254 MQAHKLVLSVCSPYFQEMFKMN----PTQH-PIVFLKDVSHSALRDLLQFMYQG----EV 406
+ AHKL+L+ S F+ MF+++ T+H + L ++ H L ++F+
Sbjct: 39 ISAHKLILASRSEVFKNMFELDEFKTSTKHVETITLSEMKHEELEAFVEFICSDGSMLSA 98
Query: 407 NVKQEELASFIS 442
NVKQ + +++
Sbjct: 99 NVKQHARSLYLA 110
>At4g04090.1 68417.m00578 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
POZ protein (SP:O43791) [Homo sapiens]
Length = 192
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +2
Query: 254 MQAHKLVLSVCSPYFQEMFKMN----PTQHPIVFLKDVSHSALRDLLQFMY 394
+ AHK +LS S F+EMF+ + ++ + L ++ H L + F Y
Sbjct: 38 ISAHKRILSARSEVFEEMFESDKYKASSKLETITLSEMKHEVLEAFVDFTY 88
>At2g40440.1 68415.m04990 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain;
Length = 194
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +2
Query: 260 AHKLVLSVCSPYFQEMFKMN----PTQHPIVFLKDVSHSALRDLLQFMY 394
AHKLVLS S F++M + + Q + L ++ H L ++F+Y
Sbjct: 42 AHKLVLSARSEVFKKMLESDEIKASAQLETITLCEMKHEELEAFIEFIY 90
>At2g39760.1 68415.m04882 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 408
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 257 QAHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMY 394
+AHKL+L+ SP F+ F + + + D+ S + +L F+Y
Sbjct: 206 KAHKLILAARSPVFRAQFFGPIGNNNVDRIVIDDIEPSIFKAMLSFIY 253
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,263,291
Number of Sequences: 28952
Number of extensions: 243633
Number of successful extensions: 596
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -