Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060353.seq
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|... 29 0.48
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 27 1.9
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 27 3.4
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 26 4.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 4.5
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 26 5.9
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.9
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 7.9
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 7.9
>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -3
Query: 481 RTSRSQSGIPMSETRPPLDLDKASEVDPVFYCV 383
+T+ S S +P+SE P +L+K +V P ++C+
Sbjct: 148 KTNFSSSTVPVSELPLPKNLEKLIDVHPSWFCL 180
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 283 NVPTGIKFVGDLLFLTVPRRRFGIPSTLNYIDRRHSKKLDP--LLKPYPNPEAVSSLTSV 456
++P G K D+ +LTV + N ID + + L+KPY + S+L V
Sbjct: 272 SMPAGAKLGADIFWLTVKMLKICGSHVGNRIDSIEALEYVSRGLVKPYYKVQPFSTLPDV 331
Query: 457 YR 462
YR
Sbjct: 332 YR 333
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -1
Query: 243 WTKCIXPGERMRSASFIYFVPLKSYPNCFQAYNCFILPF 127
W K I G R R + F+ P + + Q YN + F
Sbjct: 188 WDKLIHDGIRARISQFVILPPFQHQGHGSQLYNAIVSTF 226
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 268 FIQYNNVPTGIKFVGDLLF 324
F QYNNVP GIK V + ++
Sbjct: 272 FEQYNNVPLGIKGVIEAIY 290
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 252 PSSWTKCIXPGERMRSASFIYFVPLKSYP 166
P+ W+ + P E + AS +++VP +P
Sbjct: 161 PTDWSVAMSPPETEQDASTLFWVPANLHP 189
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 355 PSTLNYIDRRHSKKLDPLLKPYP 423
PS + R H + +D LKPYP
Sbjct: 481 PSAARTVWRGHDRYIDTYLKPYP 503
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 675 VGSTSNRKRRQTTRSSLIN 619
+ STS+RKRR+ +R S++N
Sbjct: 48 IKSTSDRKRRRHSRMSIVN 66
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = -3
Query: 496 PSTVWRTSRSQSGIPMSETRPPLDLDKASEVDPVFYCVSCLCSLTSMESQISSLGPSKIA 317
P+T S + P S P + +S +DP + L S TS+E ISS S
Sbjct: 109 PATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSISSSSLSSSD 168
Query: 316 DLRQT*FLS 290
L + F S
Sbjct: 169 PLTSSTFSS 177
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 7.9
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = -1
Query: 258 AAPSSWTKCIXPGERMRSASFIY 190
A P +W C+ PG R+ +++
Sbjct: 739 AIPDTWELCLLPGHRIGEPEYLF 761
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 359 DGIPNLLLGTVKNSRSPTNLIPVGTLLYCIKNFSLLLALGRNVSLRASVCGLHLL 195
DG PN + GT + SP+ P GT L + LL +G ++ A G+ ++
Sbjct: 45 DG-PNGIRGTSFFNSSPSACFPCGTALGATFDKKLLFEVGEYLAEEAKAKGVSVV 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,453
Number of Sequences: 5004
Number of extensions: 64551
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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