Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060353.seq
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0492 - 9866492-9866848 31 1.1
11_01_0327 - 2446949-2446999,2447060-2447299,2447542-2447813,244... 29 3.5
05_07_0201 + 28377250-28377515,28377588-28377852,28377927-28378559 29 3.5
01_06_0499 + 29823578-29823754,29823882-29824002,29825103-298252... 29 3.5
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 29 4.6
04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887 28 6.1
01_06_1768 + 39771025-39771241,39771284-39771513,39772165-397722... 28 6.1
01_01_0162 - 1394980-1395760,1396024-1396037 28 6.1
01_01_0159 + 1380421-1381143 28 6.1
>09_02_0492 - 9866492-9866848
Length = 118
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -3
Query: 553 IAGGFTCLLAPGTSSVRYPPSTVWRTSRSQSGIPMSETRPPLDLDKASEVD 401
IA FT +AP TS+VR PP T+ + +P + L L + EVD
Sbjct: 62 IARRFTAAVAPSTSTVRQPPRKTGTTTAIAAAMPRT-----LPLARIKEVD 107
>11_01_0327 -
2446949-2446999,2447060-2447299,2447542-2447813,
2447917-2447956,2448057-2448134,2448212-2448271,
2448434-2448493,2449620-2449766,2449921-2450018,
2450455-2450582,2451275-2451321
Length = 406
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 383 DTVKNWIHF*SLIQIQRRSRL*HRYTGLRSTRAPDCGWWIPDARGSRCEKTSEATRDP 556
DT+ ++ H +L + ++ + H TG+ +T A C W+ R S KT DP
Sbjct: 261 DTLTHYDHLFNLKGMAAKADVFHLITGMWATPAERCFLWMGGFRPSELLKTLTPQLDP 318
>05_07_0201 + 28377250-28377515,28377588-28377852,28377927-28378559
Length = 387
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 455 YTGLRSTRAPDCGWWIPDARG 517
Y LR A GWWIP RG
Sbjct: 345 YGALRDEHAVPAGWWIPSNRG 365
>01_06_0499 +
29823578-29823754,29823882-29824002,29825103-29825227,
29825338-29825432,29825890-29825994,29826103-29826899,
29827100-29827154,29827930-29828035,29828126-29828268,
29828816-29829038
Length = 648
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 528 SHREPLASGIHHPQSGARVDRSPVYRCQRRDR-LWIWIRLQKWI 400
S +EP A+ HH +GA P+ R R+ + LW L+KW+
Sbjct: 28 SQQEPAATASHH-AAGAGASSRPMRRKGRKQKQLWPKTVLRKWL 70
>05_03_0359 -
12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 591 EIQLMCQPIVSPGSRVASLVFSHREPLASG 502
E+ MC P++SP S V +V S + + +G
Sbjct: 893 EVMKMCMPLLSPASGVIHVVMSEGQAMQAG 922
>04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887
Length = 253
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -3
Query: 640 HQEFAH*PIPSDPVRI*NPAYVSANCKPRIAGGFTCLLAPGTSSVRYPPSTVWRTSR 470
H ++ P P+ V + P Y +AN P AGG+ + P + +R+PP + SR
Sbjct: 182 HHHYSR-PEPAMVVPVHLP-YYAANATPYYAGGYYPIPPPMPAMLRHPPQLRPQPSR 236
>01_06_1768 +
39771025-39771241,39771284-39771513,39772165-39772245,
39772468-39772824,39772942-39773046
Length = 329
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 337 RRRFGIPSTLN-YIDRRHSKKLDPLLKPYPNPEAVSSLTS 453
RRR GIP+ + ++ RRH+ L L P + +S + S
Sbjct: 26 RRRRGIPAAVTGFLSRRHAPALQRRLAPLHGEDLISPMRS 65
>01_01_0162 - 1394980-1395760,1396024-1396037
Length = 264
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 550 AGGFTCLLAPGTSSVRYPPSTVWRTSRSQSGIPMSETRPPLDL 422
AG LLA T + +P + +WR R+ G+P+ E + L L
Sbjct: 88 AGATAALLAHFTGTHGWPATVMWRR-RAAVGVPLQEGKRVLSL 129
>01_01_0159 + 1380421-1381143
Length = 240
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 550 AGGFTCLLAPGTSSVRYPPSTVWRTSRSQSGIPMSETRPPLDL 422
AG LLA T + +P + +WR R+ G+P+ E + L L
Sbjct: 64 AGATAALLAHFTGTHGWPATVMWRR-RAAVGVPLQEGKRVLSL 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,126,404
Number of Sequences: 37544
Number of extensions: 444277
Number of successful extensions: 1214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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