Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060353.seq
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50800| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)                  28   8.3  

>SB_50800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 442 TRPPLDLDKASEVDPVFYCVSCLCSLTSMESQISSLG 332
           T PPL++D   ++D +   V+C C L S E+ +S  G
Sbjct: 19  TGPPLEVDGIDKLDVLLRTVTCRCWLVS-ETHVSQTG 54


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 499 PPSTVWRTSRSQSGIPMSE 443
           PPS+ W ++R+  G+P+SE
Sbjct: 421 PPSSNWNSNRNSGGLPLSE 439


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 589  NPAYVSANCKPRIAGGFTCLLAPG 518
            NP +  A C    A GFTC+ APG
Sbjct: 5415 NPCFNGAKCV-NTASGFTCMCAPG 5437


>SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1627

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 266 NFSLLLALGRNVSLRASVCGLHLLYIL 186
           NF+ + A G N S+  +VCGL LLYI+
Sbjct: 621 NFANITATG-NFSVLFTVCGLFLLYII 646


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,079,738
Number of Sequences: 59808
Number of extensions: 495613
Number of successful extensions: 1354
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)