Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060353.seq
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical...    31   0.78 
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical...    31   0.78 
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical...    31   0.78 
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct...    31   0.78 
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct...    31   0.78 
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct...    31   0.78 
Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68113-1|CAA92151.1|  321|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    29   2.4  
Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z48783-6|CAA88700.1|  371|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z49938-3|CAA90188.1|  306|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF022982-8|AAB69934.1|  234|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
           protein Y51A2D.19c protein.
          Length = 1131

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 438 DRLWIWIRLQKWIQFFTVSPVYV 370
           D++W  + +  WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224


>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
           protein Y51A2D.19b protein.
          Length = 1118

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 438 DRLWIWIRLQKWIQFFTVSPVYV 370
           D++W  + +  WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224


>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
           protein Y51A2D.19a protein.
          Length = 1140

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 438 DRLWIWIRLQKWIQFFTVSPVYV 370
           D++W  + +  WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224


>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans
           large-conductance calcium-activatedpotassium channel
           SLO-1c protein.
          Length = 1131

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 438 DRLWIWIRLQKWIQFFTVSPVYV 370
           D++W  + +  WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224


>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans
           large-conductance calcium-activatedpotassium channel
           SLO-1b protein.
          Length = 1118

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 438 DRLWIWIRLQKWIQFFTVSPVYV 370
           D++W  + +  WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224


>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans
           large-conductance calcium-activatedpotassium channel
           SLO-1a protein.
          Length = 1140

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 438 DRLWIWIRLQKWIQFFTVSPVYV 370
           D++W  + +  WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224


>Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical
           protein F26E4.7b protein.
          Length = 608

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 65  INYVLLIFVLSNCVNCNVYIGNGKMKQLYAWKQL-GYDFNGTKYIKDAD 208
           I +++ IF+L   +  +++    +M  L  W+ L GY    T Y+KD++
Sbjct: 2   IPFLVFIFILFTPIKSDLWAETERMPDLQQWRALCGYYAVATAYMKDSN 50


>Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical
           protein F26E4.7a protein.
          Length = 677

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 65  INYVLLIFVLSNCVNCNVYIGNGKMKQLYAWKQL-GYDFNGTKYIKDAD 208
           I +++ IF+L   +  +++    +M  L  W+ L GY    T Y+KD++
Sbjct: 2   IPFLVFIFILFTPIKSDLWAETERMPDLQQWRALCGYYAVATAYMKDSN 50


>Z68113-1|CAA92151.1|  321|Caenorhabditis elegans Hypothetical
           protein E03G2.1 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 56  F*MFRILFCLCETCCRSC 3
           F  F I+FCL E C RSC
Sbjct: 109 FSKFNIIFCLLENCARSC 126


>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 336 KEEIWDSIDVKLHRQETQ*KTGSTSEALSKSRGGLVSDIGIPDCDRLVRQTVDGGYRTLE 515
           K+ IW +   + H++E + +   TSE     R   V+DI  P   R   Q ++ G +  +
Sbjct: 662 KKNIWANFTEEQHQEEVEVQQADTSERKQNFRQVAVTDIA-PGALRFSAQNIEDGPKIEK 720

Query: 516 VPGARRQ 536
           +    RQ
Sbjct: 721 MTTEMRQ 727


>Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical
           protein T06G6.8 protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 526 APGTSSVRYPPSTVWRTSRSQSGIPMSETR 437
           AP T S + P S+VW+ + + S +P   +R
Sbjct: 213 APSTRSSKLPTSSVWKATTTPSDLPTKPSR 242


>Z48783-6|CAA88700.1|  371|Caenorhabditis elegans Hypothetical
           protein F33H1.5 protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -2

Query: 347 NLLLGTVKNSRSPTNLIPVGTLLYCIKNFSLLLALGRNVSLRASV-CGLHLLYILFH*NR 171
           NLLL  V   R+P ++     LL+    F LL  +   ++ + ++  GL L YI FH   
Sbjct: 43  NLLLIYVIFKRTPKHMRSYAVLLFNFAIFDLLTCVASLLACQKTIFSGLSLTYI-FHGPC 101

Query: 170 ILIASKRTIVSFCHSQCKHYN*HS 99
             ++S  ++  FCH    H   HS
Sbjct: 102 KYVSS--SLCFFCHCFVCHAMAHS 123


>Z49938-3|CAA90188.1|  306|Caenorhabditis elegans Hypothetical
           protein F38A3.2 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/87 (22%), Positives = 29/87 (33%)
 Frame = -3

Query: 586 PAYVSANCKPRIAGGFTCLLAPGTSSVRYPPSTVWRTSRSQSGIPMSETRPPLDLDKASE 407
           PA  +     + +GG  C    G S    PP T    S  + G+   + +P  D D  + 
Sbjct: 95  PADAAVQATTQSSGGSCCSCKAGASGPPGPPGT--DGSDGKDGLSGPDGQPGADADPEAT 152

Query: 406 VDPVFYCVSCLCSLTSMESQISSLGPS 326
                +C  C              GPS
Sbjct: 153 PSEADFCFDCPAGPPGPAGNPGPKGPS 179


>AF022982-8|AAB69934.1|  234|Caenorhabditis elegans Hypothetical
           protein T23B12.1 protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 436 PPLDLDKASEVDPVFYCVSCLCSLTSMESQIS-SLGPSKI 320
           P + +++ASE    +YC +CL S   ++S  S S  P+K+
Sbjct: 180 PTVSIEEASEPSFKYYCKTCLVSKKVIDSNRSRSPSPAKL 219


>Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical
           protein Y57G11C.5 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 690 LRPHAVGSTSNRKRRQTTR--SSLINQYLRIQFVSEIQLM 577
           LRPH +GS     R+ TT+  S ++++    Q+++E +L+
Sbjct: 239 LRPHLIGSLPYANRQLTTQSLSKMLDELYTAQWITEGRLL 278


>Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical
           protein F15A2.3 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 164 IASKRTIVSFCHSQCKHY 111
           +A+K T+  FCH  CK++
Sbjct: 71  VANKSTLAVFCHGPCKYF 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,986,844
Number of Sequences: 27780
Number of extensions: 373624
Number of successful extensions: 1054
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)