Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060353.seq
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72960.1 68414.m08438 root hair defective 3 GTP-binding (RHD3...    31   0.55 
At5g14430.2 68418.m01689 dehydration-responsive protein-related ...    29   2.9  
At5g14430.1 68418.m01688 dehydration-responsive protein-related ...    29   2.9  
At3g02430.1 68416.m00230 hypothetical protein contains Pfam prof...    29   2.9  
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re...    28   5.1  
At5g25550.1 68418.m03040 leucine-rich repeat family protein / ex...    28   6.8  
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ...    27   8.9  

>At1g72960.1 68414.m08438 root hair defective 3 GTP-binding (RHD3)
           family protein contains Pfam profile: PF05879 root hair
           defective 3 GTP-binding protein (RHD3)
          Length = 748

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 318 AIFDGPKEEIWDSIDVKLHRQETQ*KTGSTSEALS 422
           A+ DG  +E W ++  KLHR+ET+      S AL+
Sbjct: 429 ALLDGANDETWSTVK-KLHRRETESAVSGLSSALA 462


>At5g14430.2 68418.m01689 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 612

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 232 TFRPRARSSEKFFIQYNNVPTGIKFVGDLLFLTVPRRRFGIPSTLNYIDRRHSK 393
           +F P +R S++F    N V TGI  + +   + +   RF +P ++   D RHS+
Sbjct: 37  SFAPGSRKSDEFDGSNNRVRTGIGSLRN-RDIVLAVSRFEVPKSVPICDSRHSE 89


>At5g14430.1 68418.m01688 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 612

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 232 TFRPRARSSEKFFIQYNNVPTGIKFVGDLLFLTVPRRRFGIPSTLNYIDRRHSK 393
           +F P +R S++F    N V TGI  + +   + +   RF +P ++   D RHS+
Sbjct: 37  SFAPGSRKSDEFDGSNNRVRTGIGSLRN-RDIVLAVSRFEVPKSVPICDSRHSE 89


>At3g02430.1 68416.m00230 hypothetical protein contains Pfam profile
           PF05078: Protein of unknown function (DUF679)
          Length = 219

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 229 DTFRPRARSSEKFFIQYNNVPTGIKFVGDLLFLTVPRRRFGIPSTL-NYIDRR 384
           D F P   +  K  +    VP G+  +  LLF+  P RR GI   +   +DRR
Sbjct: 169 DCFYPSPEAETKHVLDI--VPVGVGVMCSLLFMVFPARRHGIGYLVTGSVDRR 219


>At3g27550.1 68416.m03443 group II intron splicing factor
           CRS1-related contains weak similarity to CRS1 [Zea mays]
           gi|9837550|gb|AAG00595
          Length = 491

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 365 NVDGIPNLLLGTVKNSRSPTNLIPVGTL 282
           N+  +  +++   +N R P NLIPV TL
Sbjct: 165 NIHNVKTIIMFRGRNYRQPKNLIPVNTL 192


>At5g25550.1 68418.m03040 leucine-rich repeat family protein /
           extensin family protein similar to leucine-rich
           repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana];
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 433

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -3

Query: 562 KPRIAGGFTCLLAPGTSSVRYPPSTVWRTSRSQSGIPMSETRPPLDLDKASEVDPVFY 389
           KP     F C  +PG+S    PPS +  +S+  +  P S T PPL     +   P  Y
Sbjct: 364 KPVDCDSFKC--SPGSSCFSPPPSQISPSSQPLAPAP-SPTSPPLSTPPPARPCPPVY 418


>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
           identical to ubiquitin-specific protease 21 GI:11993482
           [Arabidopsis thaliana]
          Length = 732

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 442 TRPPLDLDKASEVDPVFYCVSCLCSLTSMESQISSLGPSK 323
           T+P   LD++S   P+   V+   SL+S   QI +L P+K
Sbjct: 19  TKPNQTLDESSPTAPIRDLVTNSLSLSSPIRQIQALSPAK 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,948,769
Number of Sequences: 28952
Number of extensions: 349089
Number of successful extensions: 942
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)