Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060352.seq
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B4A5A Cluster: PREDICTED: similar to ENSANGP000...    78   2e-13
UniRef50_Q29GU7 Cluster: GA11287-PA; n=2; pseudoobscura subgroup...    48   2e-04
UniRef50_Q9VWB7 Cluster: CG11940-PA, isoform A; n=3; Diptera|Rep...    45   0.002
UniRef50_P34400 Cluster: Abnormal cell migration protein 10; n=4...    39   0.10 
UniRef50_Q4SJ62 Cluster: Chromosome 4 SCAF14575, whole genome sh...    35   2.2  
UniRef50_Q70E73-6 Cluster: Isoform RMO1ab of Q70E73 ; n=27; Eute...    34   2.9  
UniRef50_Q70E73 Cluster: Ras-associated and pleckstrin homology ...    34   2.9  
UniRef50_UPI0000ECCC4D Cluster: Shugoshin-like 1 (hSgo1) (Serolo...    33   5.0  
UniRef50_UPI0000E807E4 Cluster: PREDICTED: hypothetical protein;...    33   6.6  
UniRef50_UPI000065D9FC Cluster: Ras-associated and pleckstrin ho...    33   6.6  
UniRef50_Q9S1Y2 Cluster: Putative uncharacterized protein SCO001...    33   6.6  
UniRef50_Q0V2P0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  

>UniRef50_UPI00015B4A5A Cluster: PREDICTED: similar to
           ENSANGP00000010267; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to ENSANGP00000010267 - Nasonia
           vitripennis
          Length = 1056

 Score = 78.2 bits (184), Expect = 2e-13
 Identities = 51/125 (40%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
 Frame = +3

Query: 210 WRTDRSYCGS*FNRRGSLALRPL--EIVAPRIDTYRFSMANLEETQDADLDAILGELCAL 383
           W ++        N   S  LRP   +I  PRID+YR SMANLE++QD DLDAILGELCAL
Sbjct: 25  WLSELDSLAVSLNNVSSATLRPYNPDINTPRIDSYRISMANLEDSQDVDLDAILGELCAL 84

Query: 384 DSEYDEELSRVSSGFASGSKDRVPRTTE-PCTVRQEKDNSDAARGSRAPSPRTMTSAFSD 560
           +   + +++       +    R+ R T       +  D      G R  SP    SAFSD
Sbjct: 85  EQRCENDIASA----PTSDNQRLNRPTNGRINPGENTDIGKNEAGMRTDSPDN-DSAFSD 139

Query: 561 TVSML 575
           TVSML
Sbjct: 140 TVSML 144



 Score = 33.5 bits (73), Expect = 5.0
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 151 EEVGAGSTAD-DPEALLNEWLGELTVLTAGLNS 246
           EE G  S  + DPE L+NEWL EL  L   LN+
Sbjct: 6   EEGGEDSDNETDPEQLMNEWLSELDSLAVSLNN 38


>UniRef50_Q29GU7 Cluster: GA11287-PA; n=2; pseudoobscura
           subgroup|Rep: GA11287-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 1150

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 25/48 (52%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
 Frame = +3

Query: 303 TYRFSMANLEETQDADLDAILGELCALDSE--YDEELSRVSSGFASGS 440
           TYR SMANLE+TQ+++LD ILGEL  L+++  Y E      +G ASG+
Sbjct: 65  TYRISMANLEDTQESELDQILGELSLLEAQISYGEASFLPGAGSASGT 112


>UniRef50_Q9VWB7 Cluster: CG11940-PA, isoform A; n=3; Diptera|Rep:
           CG11940-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 1162

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 22/42 (52%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
 Frame = +3

Query: 270 RPLEIVAPRID-TYRFSMANLEETQDADLDAILGELCALDSE 392
           RPL   A ++  TYR SMANLE++Q+++LD ILGEL  L+++
Sbjct: 112 RPLTPEAKQLSHTYRISMANLEDSQESELDQILGELSLLEAQ 153


>UniRef50_P34400 Cluster: Abnormal cell migration protein 10; n=4;
           Caenorhabditis|Rep: Abnormal cell migration protein 10 -
           Caenorhabditis elegans
          Length = 779

 Score = 39.1 bits (87), Expect = 0.10
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
 Frame = +3

Query: 270 RPLEIVAPRIDTYRFSMANLEETQDADLDAILGELCALDSEY------DEELSRVSSGFA 431
           RP     P IDT R+SM N++E+ D  LD +L EL AL+++       D+ L  VS   A
Sbjct: 129 RPQVPPKPPIDTVRYSMNNIKESADWQLDELLEELEALETQLNSSNGGDQLLLGVSGIPA 188

Query: 432 SGSKDRV 452
           S S++ V
Sbjct: 189 SSSRENV 195


>UniRef50_Q4SJ62 Cluster: Chromosome 4 SCAF14575, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 4 SCAF14575, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 875

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +3

Query: 399 EELSRVSSGFASGSKDRVPRTTEPCTVRQEKDNSDAARGSRAPS 530
           + +S  SSGF S S+DR P   EP   RQ +  S AA  ++ P+
Sbjct: 300 QSVSVCSSGFCSASQDRSPDPGEPAARRQTEGTSPAAWQTKHPT 343


>UniRef50_Q70E73-6 Cluster: Isoform RMO1ab of Q70E73 ; n=27;
           Euteleostomi|Rep: Isoform RMO1ab of Q70E73 - Homo
           sapiens (Human)
          Length = 649

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
 Frame = +3

Query: 303 TYRFSMANLEET----QDADLDAILGELCALDSEYDEELSRVSSG 425
           +YRFS+ NL E     +  DLDA++ +LC++    ++ELS + SG
Sbjct: 66  SYRFSIYNLNEALNQGETVDLDALMADLCSI----EQELSSIGSG 106


>UniRef50_Q70E73 Cluster: Ras-associated and pleckstrin homology
           domains-containing protein 1; n=21; Amniota|Rep:
           Ras-associated and pleckstrin homology
           domains-containing protein 1 - Homo sapiens (Human)
          Length = 1302

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
 Frame = +3

Query: 303 TYRFSMANLEET----QDADLDAILGELCALDSEYDEELSRVSSG 425
           +YRFS+ NL E     +  DLDA++ +LC++    ++ELS + SG
Sbjct: 66  SYRFSIYNLNEALNQGETVDLDALMADLCSI----EQELSSIGSG 106


>UniRef50_UPI0000ECCC4D Cluster: Shugoshin-like 1 (hSgo1)
           (Serologically defined breast cancer antigen NY-BR-85).;
           n=4; Gallus gallus|Rep: Shugoshin-like 1 (hSgo1)
           (Serologically defined breast cancer antigen NY-BR-85).
           - Gallus gallus
          Length = 644

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 390 EYDEELSRVSSGFASGSKDRVPRTTEPCTVRQEKDNSDAARGSRAPS-PRT 539
           + D E ++VSSG +S  K R  ++ E   VR+EKD      G++  S PR+
Sbjct: 323 QMDSETAKVSSGNSSDLKQRACKSREDSQVRREKDQKVKMGGTKDTSRPRS 373


>UniRef50_UPI0000E807E4 Cluster: PREDICTED: hypothetical protein; n=1;
            Gallus gallus|Rep: PREDICTED: hypothetical protein -
            Gallus gallus
          Length = 1481

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 254  SPVELRPAVRTVSSPSHSFRRASGSSAVEPAPTSSTNAIL 135
            SP+E      T + P  S RR SG+SAV P+P+ +   +L
Sbjct: 1282 SPLEYSTHHSTFTPPETSIRRLSGASAVSPSPSLTQRKLL 1321


>UniRef50_UPI000065D9FC Cluster: Ras-associated and pleckstrin
           homology domains-containing protein 1 (RAPH1)
           (Lamellipodin) (Proline-rich EVH1 ligand 2) (PREL-2)
           (Protein RMO1) (Amyotrophic lateral sclerosis 2
           chromosomal region candidate 9 gene protein).; n=1;
           Takifugu rubripes|Rep: Ras-associated and pleckstrin
           homology domains-containing protein 1 (RAPH1)
           (Lamellipodin) (Proline-rich EVH1 ligand 2) (PREL-2)
           (Protein RMO1) (Amyotrophic lateral sclerosis 2
           chromosomal region candidate 9 gene protein). - Takifugu
           rubripes
          Length = 1262

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
 Frame = +3

Query: 303 TYRFSMANLEETQD----ADLDAILGELCALDSEYDEELSRVSSGFASGSK 443
           +YRFSM N+ E  +     DLDA++ +LC+++ E +  +S+ +S   S +K
Sbjct: 66  SYRFSMYNINEALNQGDTVDLDALMADLCSIEQELN-TISKPNSTSRSHNK 115


>UniRef50_Q9S1Y2 Cluster: Putative uncharacterized protein SCO0012;
           n=1; Streptomyces coelicolor|Rep: Putative
           uncharacterized protein SCO0012 - Streptomyces
           coelicolor
          Length = 136

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 358 PFWANYALSIPNMTKNYLECHQALHPDQKTGYREPLSPVPCVR 486
           P  A +  + P +T + ++ HQ LH D  TG R P  P P +R
Sbjct: 89  PETAEFDKAGPRITVDLMQEHQRLHGDVLTGLRAPPEPPPSLR 131


>UniRef50_Q0V2P0 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 484

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 317 REPIGVDAWSD-YFKRPQS**TSPVELRPAVRTVSSPSHSFRRASGSSAVEPA 162
           + PIGV AWSD Y  +P    +  +   PA+    +P HS R AS  S+  P+
Sbjct: 163 KRPIGVGAWSDVYLAKPNLPQSRDIPAAPAMTPPLTPRHS-RGASKDSSYFPS 214


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 606,694,608
Number of Sequences: 1657284
Number of extensions: 11662874
Number of successful extensions: 37440
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 35936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37419
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)