Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060352.seq
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    24   1.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   1.0  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   1.8  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   2.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.4  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   3.1  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   7.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.2  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
 Frame = +1

Query: 319 WQISKKRKTLILTPFWANYALSIPNMTKNYLECHQALHPDQKTGYREPLSPVPCVRRR-- 492
           WQ +K    + +  FWA Y   + +  KN    +    P+    +  PL+  P   +   
Sbjct: 378 WQDTKSANKIAMKLFWAQYTNKMIDRLKN---ANNNELPEHVIMWSSPLTESPYFEKLDV 434

Query: 493 --TTAMRLGD------HAHRV 531
             T  + LGD      H HRV
Sbjct: 435 KVTVQLWLGDPSSVLSHGHRV 455


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 213 AKPLVQKSFGIVSGGA 166
           A+PL+  SFGI  GGA
Sbjct: 185 ARPLLPPSFGIFPGGA 200


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 399 RHIRNRERIVRPEWRQDQRLAF 334
           +H+R R     P+W Q Q L F
Sbjct: 213 KHLRLRRDTAPPQWYQHQPLLF 234


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 594 KPK-IRSKAWILCH*KRKSLSGDSV 523
           KPK IRSK   + H  +K+++GD V
Sbjct: 161 KPKKIRSKLGSIWHSVKKTVAGDKV 185


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 441 KDRVPRTTEPCTVRQEKDNSDAARGSRAPSPRTMTSAF-SDTVSML 575
           K  VP+ T P     E   + ++    +P+P + +S   S+T SML
Sbjct: 203 KRNVPKPTVPKIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSML 248


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 441 KDRVPRTTEPCTVRQEKDNSDAARGSRAPSPRTMTSAF-SDTVSML 575
           K  VP+ T P     E   + ++    +P P + +S   S+T SML
Sbjct: 203 KRNVPKPTVPKIPPAEFPTTSSSSALESPDPASRSSCLGSNTSSML 248


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 163 HRLPLPTPFYFPVFVAAFKLRYYSMNKRVD 74
           H   L T F     +  FK+RY  +NK ++
Sbjct: 115 HICELHTIFLVCNVLTVFKIRYKDLNKALE 144


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 471 RAQWFSVPCLLIRMQ 427
           R+ WF + CLL   Q
Sbjct: 81  RSNWFKIHCLLQEQQ 95


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,065
Number of Sequences: 336
Number of extensions: 2671
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)