Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060352.seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.6  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    27   3.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.9  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    25   7.8  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   7.8  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    25   7.8  

>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +1

Query: 70  VGPRVYSSNNIEV*KQRQTQENKMALVEEVGAGSTADDPEALLNEWLGELTVLTAGLNST 249
           VG          V     +   +  L E   + S  +  + L+NE  GE+  LT G+N  
Sbjct: 130 VGQHFIEEEERNVSLSNNSSGQRQPLTESKISNSQLEYQQRLINERQGEIENLTQGINEL 189

Query: 250 GEV 258
            E+
Sbjct: 190 NEI 192


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 196 EELRDRQRWSPHRLPLPTPFYFPVFVAAFKLRYYSMNKR 80
           EE ++++ W P  + +      P F+  F+LRY+ M K+
Sbjct: 244 EEEKEQESWLPLFISMLAYPRMPTFLHIFELRYHIMIKK 282


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 552 KRKSLSGDSVRVIPEPHRCCPSPDARYRAQ 463
           K  +L G+ +  IPEP R  PS  +  R Q
Sbjct: 177 KYNALVGNEINQIPEPERTPPSTRSEIRVQ 206


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 224 TVSSPSHSFRRASGSSAVEPAPTSSTNAILFS 129
           + SSPS      S SS +  +PT ST++++ S
Sbjct: 607 STSSPSSISSSISSSSTILSSPTPSTSSLMIS 638


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 172 TADDPEALLNEWLGELTVLTAGLNST 249
           T + P A  + WL +LT L+   NST
Sbjct: 93  TLEKPIASTHRWLSKLTALSKSTNST 118


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +3

Query: 282 IVAPRIDTYRFSMANLEETQDADLDAILGELCALDSEYDEELSRVSSGFAS-GSKDRVPR 458
           +V+P ID       N+E          L E   + +   EELSRVS  F S GS+  +  
Sbjct: 23  MVSPSIDVSSSPRPNVERFSPCSTKKDLLEGNNIMTRIPEELSRVSLQFDSKGSQQSMIF 82

Query: 459 TTEPCTVRQE 488
           T   C   +E
Sbjct: 83  TNNRCLSDKE 92


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 390 EYDEELSRVSSGFASGSKDRVPRTTEPCTVRQEKDNSDAARGSRAPSPRTMTSA 551
           E +E L  +    +  SK   P  T+P   ++E + +  +   +A SP+  T A
Sbjct: 31  EIEESLPSILGEKSEVSKPFKPAVTDPSNAKKEINMAIESPSKKATSPKKATPA 84


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 159 DFLYQRHFIFLCLSLLLNFDIIR*INAWTDSSRDLLLHFY 40
           D    +   + C SL L F ++R  + WT + +D + H +
Sbjct: 138 DLHVMQRLSWFCASLALLFILMRYYDFWTKACKDGIKHIF 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,222
Number of Sequences: 5004
Number of extensions: 47228
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)