Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060352.seq
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0168 + 17953848-17954585                                         30   2.0  
02_05_0589 - 30176354-30176829,30176895-30177075                       29   4.6  
12_01_0247 - 1836971-1837810                                           28   8.0  
10_01_0135 - 1636096-1636269,1636366-1636407,1637356-1638286,163...    28   8.0  
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595           28   8.0  

>03_04_0168 + 17953848-17954585
          Length = 245

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 453 PRTTEPCTVRQEKDNSDAARGSRAPSPRTMTSAFS 557
           PR + P T   ++  + AAR +RAP P    S  S
Sbjct: 112 PRPSSPSTAAAQQQGASAARATRAPPPAPAASRVS 146


>02_05_0589 - 30176354-30176829,30176895-30177075
          Length = 218

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 257 TSPVELRPAVRTVSSPSHSFRRA-SGSSAVEPAPTSSTNAILFSCVCRCF 111
           TSP   RP+ RT  SPS    +A SG+S       S   A+L  CV   F
Sbjct: 166 TSPSASRPSARTSPSPSPGPAQAPSGASGRALTGFSMAAALLVVCVVSVF 215


>12_01_0247 - 1836971-1837810
          Length = 279

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 333 ETQDADLDAILGELCALDSEYDEELSRVSSGFASGSKDRVP 455
           E QDA +D  + E+CA++S    E++R  SG  + +K  VP
Sbjct: 187 EEQDARVDRKIVEICAMESLSGLEVNR--SGMTNFTKKDVP 225


>10_01_0135 -
           1636096-1636269,1636366-1636407,1637356-1638286,
           1638328-1638332
          Length = 383

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 340 KTLILTPFWANYALSIPNMTKNYLECHQALHPDQKTGYREPLS-PVPCVRR 489
           +T +L+  W N  LS+P +  +Y +  +    D K GY E L+  VP  +R
Sbjct: 56  QTCVLSRRWRNLWLSMPLINADYKQFFEM--TDTKAGYDEALAVAVPMFKR 104


>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
          Length = 904

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 180 VSGGARTDFLYQRHFIFLCLSLL-LNFDIIR*INAWTDSSRDLLL 49
           V+G   TD++YQ  F F    LL   F+    + A + +SR LLL
Sbjct: 408 VTGSRFTDYIYQLCFSFALFKLLRRRFEHYPMVEAGSQTSRQLLL 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,605,251
Number of Sequences: 37544
Number of extensions: 331383
Number of successful extensions: 1121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)