Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060352.seq
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.010
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.041
SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0)                       32   0.50 
SB_29048| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_29052| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)               29   4.7  
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)                   29   4.7  
SB_50224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 13/38 (34%), Positives = 27/38 (71%)
 Frame = +3

Query: 279 EIVAPRIDTYRFSMANLEETQDADLDAILGELCALDSE 392
           E+ +  +D +RFS+  +E++ + DLDA+L +LC ++ +
Sbjct: 88  ELPSKPLDEFRFSLTAMEDSGEVDLDALLEDLCVMEKD 125


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 399 EELSRVSSGFASGSKDRVPRTTEPCTVRQEKDNSDAARGS 518
           EE +R SS F S  +   PR   P   R + D+SDA+R S
Sbjct: 632 EERNRESSSFPSDQRPSAPRHDGPLRTRNDSDSSDASRSS 671


>SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0)
          Length = 704

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 321 ANLEETQDADLDAILGELCALDSEYDEELSRVSSGFASG---SKDRVPRTTEPCTVRQEK 491
           A LE       DA   E   ++  Y EEL R+ +  A G   SKDRV   T P  VR   
Sbjct: 93  AYLESVDGHSDDAAPIEGPTVEGNYTEELRRLVAYKAVGGLPSKDRVGAVTAPAAVRPGV 152

Query: 492 DNSDAARGSRAPSPR 536
           +     +G R P PR
Sbjct: 153 NPVTGNKGKRVP-PR 166


>SB_29048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 286 SLHASTPIGSRWQISKKRKTLILTPFWANYALSIPNMTKNYLEC 417
           S+ +S     RW ISK R T  L P +A  A  +     NY +C
Sbjct: 21  SVPSSPQRAKRWDISKLRPTPPLRPAYALMAKEVNKHPANYTKC 64


>SB_29052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 352 LTPFWANYALSIPNMTKNYLECHQALHPDQKTGYREPLSPVPCVRRRTT 498
           L  ++ N   ++P M K Y  C   +H   +   R  L P PCV  R T
Sbjct: 85  LLRYFLNEFAALPGMLKRYALCFDCVHAFTQAMLRGSLVP-PCVIMRVT 132


>SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)
          Length = 2278

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 390  EYDEELSRVSSGFASGSKDRVPRTTEPCTVRQEKDNSDAARGSRAPS 530
            E ++ +  VS+   + SK+  P TTEP    QEK +   A  + A S
Sbjct: 1156 EVEDSIKAVSAASQALSKEEFPPTTEPYQRNQEKLSQSGAALNAAAS 1202


>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
          Length = 2153

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 417 SSGFASGSKDRVPRTTEPCTVRQEKDNSDA-ARGSRAPSP 533
           SS     SK+  P+TTE  + +Q K+N D+    S  PSP
Sbjct: 840 SSATTPPSKNARPKTTESSSTQQFKNNGDSRTSASITPSP 879


>SB_50224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -3

Query: 248 VELRPAVRTVSSPSHSFRRAS---GSSAVEPAPTSSTNAILFSCVCRCF*TSIL 96
           V L  AV   ++P + F        S A+E  P    + ILF C CRC    IL
Sbjct: 3   VGLLVAVSYCTNPYNEFESTGILQYSDALEQLPIIICHIILFLCFCRCLTKKIL 56


>SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 361 FWANYALSIPNMTKNYLECHQALHPDQKTGYREPLSPV 474
           FW   A  + N  +N L C Q  +P  +  Y+ PL P+
Sbjct: 562 FWPCVATDVENWCRNCLVCQQRRNPVPE--YKAPLRPI 597


>SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 275 RPQS**TSPVELRPAVRTVSSPSHSFRRASGSSAV 171
           RP +  ++PV +RPA+ T   PS     A+GS++V
Sbjct: 237 RPVTASSTPVPIRPAMTTPIKPSAQTGMAAGSASV 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,889,906
Number of Sequences: 59808
Number of extensions: 372015
Number of successful extensions: 1293
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)