Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060352.seq
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 39 0.003
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 39 0.003
Z74033-2|CAA98476.2| 419|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z74033-1|CAA98475.2| 460|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z81521-4|CAB04229.1| 367|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 29 4.1
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 29 4.1
AC024835-3|AAK68538.2| 405|Caenorhabditis elegans Hypothetical ... 29 4.1
Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF125442-12|AAD12797.1| 260|Caenorhabditis elegans Hypothetical... 28 5.5
Z34533-8|CAA84297.2| 616|Caenorhabditis elegans Hypothetical pr... 28 7.2
AY552607-1|AAS89254.1| 616|Caenorhabditis elegans heparan sulfa... 28 7.2
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 28 7.2
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z68270-11|CAJ90499.1| 394|Caenorhabditis elegans Hypothetical p... 27 9.6
Z68270-10|CAA92572.2| 459|Caenorhabditis elegans Hypothetical p... 27 9.6
Z67737-6|CAA91540.3| 399|Caenorhabditis elegans Hypothetical pr... 27 9.6
AY305838-1|AAR11983.1| 459|Caenorhabditis elegans nuclear recep... 27 9.6
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n... 27 9.6
AF083227-1|AAD03685.1| 290|Caenorhabditis elegans nuclear recep... 27 9.6
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Frame = +3
Query: 270 RPLEIVAPRIDTYRFSMANLEETQDADLDAILGELCALDSEY------DEELSRVSSGFA 431
RP P IDT R+SM N++E+ D LD +L EL AL+++ D+ L VS A
Sbjct: 17 RPQVPPKPPIDTVRYSMNNIKESADWQLDELLEELEALETQLNSSNGGDQLLLGVSGIPA 76
Query: 432 SGSKDRV 452
S S++ V
Sbjct: 77 SSSRENV 83
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Frame = +3
Query: 270 RPLEIVAPRIDTYRFSMANLEETQDADLDAILGELCALDSEY------DEELSRVSSGFA 431
RP P IDT R+SM N++E+ D LD +L EL AL+++ D+ L VS A
Sbjct: 129 RPQVPPKPPIDTVRYSMNNIKESADWQLDELLEELEALETQLNSSNGGDQLLLGVSGIPA 188
Query: 432 SGSKDRV 452
S S++ V
Sbjct: 189 SSSRENV 195
>Z74033-2|CAA98476.2| 419|Caenorhabditis elegans Hypothetical
protein F38B7.1b protein.
Length = 419
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +3
Query: 288 APRIDTYRFSMANLEETQDADLDAILGELCALDSEYDEELSRVSSGFASGSKDRVPRTTE 467
APR+ T RF + D+ +L ++C + E + LS SGF T
Sbjct: 339 APRVPTSRFLSYDQSNLNDSQFSNLLNDICQWNIE--DSLSTPFSGFLPSKWSTTTEETS 396
Query: 468 PCT 476
P T
Sbjct: 397 PAT 399
>Z74033-1|CAA98475.2| 460|Caenorhabditis elegans Hypothetical
protein F38B7.1a protein.
Length = 460
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +3
Query: 288 APRIDTYRFSMANLEETQDADLDAILGELCALDSEYDEELSRVSSGFASGSKDRVPRTTE 467
APR+ T RF + D+ +L ++C + E + LS SGF T
Sbjct: 380 APRVPTSRFLSYDQSNLNDSQFSNLLNDICQWNIE--DSLSTPFSGFLPSKWSTTTEETS 437
Query: 468 PCT 476
P T
Sbjct: 438 PAT 440
>Z81521-4|CAB04229.1| 367|Caenorhabditis elegans Hypothetical
protein F32A11.6 protein.
Length = 367
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -3
Query: 218 SSPSHSFRRASGSSAVEPAPTSSTNAILF 132
SSPSHS + S S + P+PT+ N++LF
Sbjct: 36 SSPSHS--QGSSSQSGPPSPTTQLNSLLF 62
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 288 APRIDTYRFSMANLEETQDADLDAILGELCALDSEYDEELSRVSSGFASGSKDRVPR 458
AP+ + +++ +EE D D+ +L + A D++ DE+ SR+ D V R
Sbjct: 1433 APQFEQQKYATTVIEE--DVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFR 1487
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 288 APRIDTYRFSMANLEETQDADLDAILGELCALDSEYDEELSRVSSGFASGSKDRVPR 458
AP+ + +++ +EE D D+ +L + A D++ DE+ SR+ D V R
Sbjct: 1433 APQFEQQKYATTVIEE--DVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFR 1487
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 288 APRIDTYRFSMANLEETQDADLDAILGELCALDSEYDEELSRVSSGFASGSKDRVPR 458
AP+ + +++ +EE D D+ +L + A D++ DE+ SR+ D V R
Sbjct: 1433 APQFEQQKYATTVIEE--DVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFR 1487
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 288 APRIDTYRFSMANLEETQDADLDAILGELCALDSEYDEELSRVSSGFASGSKDRVPR 458
AP+ + +++ +EE D D+ +L + A D++ DE+ SR+ D V R
Sbjct: 1433 APQFEQQKYATTVIEE--DVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFR 1487
>AC024835-3|AAK68538.2| 405|Caenorhabditis elegans Hypothetical
protein Y57E12B.4 protein.
Length = 405
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 257 TSPVELRPAVRTVSSPSHSFRRASGSSAVEP-APTSSTNAI 138
TSP E+ VSS S F + SS EP AP+ ST +I
Sbjct: 159 TSPAEIDTTTPQVSS-SEPFTTSENSSTAEPFAPSDSTTSI 198
>Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical
protein K10D6.1 protein.
Length = 457
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 202 RSEELRDRQRWSPHRLPLPTPFYFPVFVAAFKLRYYS--MNKRVDR 71
R + +D WSP ++ + FP A F + Y+S NK++++
Sbjct: 401 RFQVFQDFWNWSPEKIDRVSAIMFPACFAIFNIVYWSYYYNKKLEK 446
>AF125442-12|AAD12797.1| 260|Caenorhabditis elegans Hypothetical
protein H04M03.12 protein.
Length = 260
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = -2
Query: 447 CLLIRMQSLMTL*IILRHIRNRERIVRPEWR--QDQRLAFLR-DLPSRTDRCRCVERLFQ 277
C I + S+ TL H++N R+ R +WR +R++ R LP+ T ++ + Q
Sbjct: 73 CNKITVISIKTL---ENHLKNDSRVRRVKWRHLSSERVSIYRYSLPAITYEMSFIKFIIQ 129
Query: 276 EASELMN 256
E S+L +
Sbjct: 130 EISKLQH 136
>Z34533-8|CAA84297.2| 616|Caenorhabditis elegans Hypothetical
protein B0285.5 protein.
Length = 616
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Frame = -1
Query: 208 ATRSEELRDRQRWSPHR--LPL-----PTPFYFPVFVAAFKLRYYSMNK 83
+T S E RDR R + +P+ P P+Y+P+ ++ + L++YS K
Sbjct: 134 STYSVETRDRVRCVSAKTDVPMSTQWDPIPYYYPIQISQYGLQHYSRMK 182
>AY552607-1|AAS89254.1| 616|Caenorhabditis elegans heparan sulfate
C5-glucuronyl epimeraseprotein.
Length = 616
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Frame = -1
Query: 208 ATRSEELRDRQRWSPHR--LPL-----PTPFYFPVFVAAFKLRYYSMNK 83
+T S E RDR R + +P+ P P+Y+P+ ++ + L++YS K
Sbjct: 134 STYSVETRDRVRCVSAKTDVPMSTQWDPIPYYYPIQISQYGLQHYSRMK 182
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 316 RWQISKKRKTLILTPFWANYALSIPNMTKNYLECHQALHPDQKTGYREPLSPVPCVRR 489
RW + K +K +++PF+ Y + ++L C L PDQ++ +E +PC+ R
Sbjct: 130 RW-VEKWKK--LVSPFFLPYQYIV---YPSHLACCVFLIPDQESALKELFKTLPCLPR 181
>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical protein
C01C7.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 254 SPVELR--PAVRTVSSPSHSFRRASGSSAVEPAPTSSTN 144
SP++ R PA T S + SFR+A + V PAP ST+
Sbjct: 941 SPIQDRHIPAFTTPMS-NGSFRKAPAPTPVSPAPAGSTD 978
>Z68270-11|CAJ90499.1| 394|Caenorhabditis elegans Hypothetical
protein ZC410.1b protein.
Length = 394
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 447 RVPRTTEPCTVRQE-KDNSDAARGSRAPSPRTMTS 548
R R CT R++ ++NSDAA S +PS R +S
Sbjct: 15 RSKRENFACTRRKDSRNNSDAAPNSNSPSTRQSSS 49
>Z68270-10|CAA92572.2| 459|Caenorhabditis elegans Hypothetical
protein ZC410.1a protein.
Length = 459
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 447 RVPRTTEPCTVRQE-KDNSDAARGSRAPSPRTMTS 548
R R CT R++ ++NSDAA S +PS R +S
Sbjct: 80 RSKRENFACTRRKDSRNNSDAAPNSNSPSTRQSSS 114
>Z67737-6|CAA91540.3| 399|Caenorhabditis elegans Hypothetical
protein T01H10.7 protein.
Length = 399
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 349 ILTPFWANYALSIPNMTKNYLECHQALHPDQKTGYREPLSPV 474
I T F+ N +L +P N+LE L D T Y LSPV
Sbjct: 12 ITTCFYQNESLYVPEWN-NFLENQVKLIKDVFTNYDNTLSPV 52
>AY305838-1|AAR11983.1| 459|Caenorhabditis elegans nuclear receptor
NHR-11 protein.
Length = 459
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 447 RVPRTTEPCTVRQE-KDNSDAARGSRAPSPRTMTS 548
R R CT R++ ++NSDAA S +PS R +S
Sbjct: 80 RSKRENFACTRRKDSRNNSDAAPNSNSPSTRQSSS 114
>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
non-receptor tyrosinekinase protein.
Length = 1043
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 254 SPVELR--PAVRTVSSPSHSFRRASGSSAVEPAPTSSTN 144
SP++ R PA T S + SFR+A + V PAP ST+
Sbjct: 941 SPIQDRHIPAFTTPMS-NGSFRKAPAPTPVSPAPAGSTD 978
>AF083227-1|AAD03685.1| 290|Caenorhabditis elegans nuclear receptor
NHR-11 protein.
Length = 290
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 447 RVPRTTEPCTVRQE-KDNSDAARGSRAPSPRTMTS 548
R R CT R++ ++NSDAA S +PS R +S
Sbjct: 32 RSKRENFACTRRKDSRNNSDAAPNSNSPSTRQSSS 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,781,790
Number of Sequences: 27780
Number of extensions: 270304
Number of successful extensions: 905
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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