Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060352.seq
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.39 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 218 SSPSHSFRRASGSSAVEPAPTSSTNAILFSCVC 120
           SSP +    A+ S++  P P SST A L    C
Sbjct: 825 SSPRYLSAAATSSTSTSPRPASSTAATLVLSGC 857


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 453 PRTTEPCTVRQEKDNSD 503
           PR T   +++ E DNSD
Sbjct: 216 PRLTNSNSIKHESDNSD 232


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 160 RLPLPTPFYFPVFVAAFKLRYYS 92
           R+ + +  +FP+  A F L Y+S
Sbjct: 414 RIDVISRIFFPIVFAFFNLAYWS 436


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 160 RLPLPTPFYFPVFVAAFKLRYYS 92
           R+ + +  +FP+  A F L Y+S
Sbjct: 414 RIDVISRIFFPIVFAFFNLAYWS 436


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = +1

Query: 319 WQISKKRKTLILTPFWANYALSIPNMTKNYLECH 420
           W + K+ K ++   +  +   S+P     +LE H
Sbjct: 147 WDVDKRGKIMLSFAWIGSVVCSLPQTIVFHLETH 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,506
Number of Sequences: 438
Number of extensions: 3877
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)