Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060352.seq
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38110.1 68417.m05382 expressed protein                             32   0.41 
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa...    31   0.72 
At5g06839.1 68418.m00773 bZIP family transcription factor contai...    30   1.7  
At5g54110.1 68418.m06737 vesicle-associated membrane family prot...    28   5.1  
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    28   6.7  
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ...    28   6.7  
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea...    28   6.7  

>At4g38110.1 68417.m05382 expressed protein 
          Length = 475

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 346 LILTPFWANYALSIPNMTKNYLECHQALHPDQKT 447
           LIL  FW +Y  S P++ K      Q+LH D++T
Sbjct: 331 LILYVFWDSYGRSFPDVVKGVEHTLQSLHSDRET 364


>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
           profiles PF00085: Thioredoxin, PF00515: TPR Domain;
           similar to tetratricopeptide repeat protein 2
           (GI:7248701) [Drosophila melanogaster]; similar to DnaJ
           homolog subfamily C member 7 (Tetratricopeptide repeat
           protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
           [Homo sapiens]
          Length = 699

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 224 TVSSPSHS--FRRASGSSAVEPAPTSSTNAILFSCVC 120
           T SS SHS     +S SSA  PAPTS  N +    +C
Sbjct: 108 TTSSSSHSQPLLSSSSSSATSPAPTSPANVLPTGNIC 144


>At5g06839.1 68418.m00773 bZIP family transcription factor contains
           Pfam profile: PF00170 bZIP transcription factor
          Length = 417

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +3

Query: 387 SEYDEELSRVSSGFASGSKDRVPRTTEPCTVRQEKDNSDAARGSR 521
           S +++E +R   G AS   D +P++++P T+R+   N +AAR SR
Sbjct: 93  STHNKEGNR--KGLASSDHD-IPKSSDPKTLRRLAQNREAARKSR 134


>At5g54110.1 68418.m06737 vesicle-associated membrane family protein
           / VAMP family protein similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 266

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 304 PIGSRWQ--ISKKRKTLILTPFWANYALSIPNMTKNYLECHQALHPDQKT 447
           PIG R    + KK+    L PFW   + +  + T+N  + +++ H ++ T
Sbjct: 2   PIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNT 51


>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|P41410
           DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1256

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 294 RIDTYRFSMANLEETQDADLDAILGELCALDSEYDEELSRVSSGFASGSK 443
           R+D   F  A  +   D +L+  +G  C L      E+  VS+ FA   K
Sbjct: 568 RVDNEAFHKATCDCEHDYELNEEIGMCCRLCGHVGTEIKHVSAPFARHKK 617


>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1006

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = +1

Query: 292 HASTPIGSRWQISKKRKTLILTPFWANYALSIPNMTKNYLECHQALHPDQKTGYREPLSP 471
           H   P  + +Q   + K L  TPF  +   + P    +    HQA       GYR+P   
Sbjct: 342 HHPVPPQNNYQSPLETKPLYETPFQGHQRATYPQEMNSQSSFHQA-----PLGYRQPTQT 396

Query: 472 VPCV 483
            P V
Sbjct: 397 APLV 400


>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           related to LACK protective antigen (GI:13625467)
           [Leishmania donovani]
          Length = 804

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 318 MANLEETQDADLDAILGELCALDSEYDEELSRVSSGFASGSK 443
           +A LEET DA   ++ G+L   D +  E++  + + F S  +
Sbjct: 727 LAGLEETGDAGYTSLYGQLPDYDKKRMEDVESLGTPFVSSER 768


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,069,042
Number of Sequences: 28952
Number of extensions: 256258
Number of successful extensions: 738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)