Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060351.seq
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    29   0.72 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   2.2  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.9  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    26   5.1  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 285 SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 428
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 22/75 (29%), Positives = 31/75 (41%)
 Frame = -3

Query: 319 PTKNGHAPPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATIL 140
           P+ +  APPP     +    +PP S P  I+ V  N A  ST    LP      S A + 
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALA 305

Query: 139 PPESKIFGFPEAARR 95
             + +    P  +RR
Sbjct: 306 ANKKRPPPPPPPSRR 320



 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -3

Query: 328 IAPPTKNGHAPPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSI-PLSFSF 152
           + P  ++   PPP  S  S     PP+S    +S   +     + PG + P++ PL  + 
Sbjct: 353 LPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPA--PPPAIPGRSAPALPPLGNAS 410

Query: 151 ATILPP 134
            T  PP
Sbjct: 411 RTSTPP 416



 Score = 25.4 bits (53), Expect = 6.7
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = -3

Query: 325 APPTKNGHAPPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFAT 146
           A P ++  A PP  +     +  PPV  P  +       A  S P  A PS+P+    A 
Sbjct: 394 AIPGRSAPALPPLGNASR--TSTPPVPTPPSLPPS----APPSLPPSAPPSLPMGAPAAP 447

Query: 145 ILPPESKI 122
            LPP + I
Sbjct: 448 PLPPSAPI 455


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 231 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPA 97
           FPVL QI+P  P L +  R F+  S+    SP++ +    R LP+
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKAKE--FDRPLPS 482


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -3

Query: 298 PPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATILPPESKI 122
           PPP+ S  S  +  PP +     + V    +  +T   A P+  ++ S  T++PP + +
Sbjct: 71  PPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVN-STTTVVPPTTHV 128


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 199 STPGGALPSIPLSFSFATILPPESKIFGFPEAA 101
           ST   ALP  PLSFS     P ++     PE+A
Sbjct: 420 STMPEALPREPLSFSLPEKAPEKATNISIPESA 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,425
Number of Sequences: 5004
Number of extensions: 49357
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)