Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060351.seq
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000... 33 0.14
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 30 1.7
03_06_0189 + 32214702-32215154 29 2.3
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 3.0
11_06_0610 - 25449085-25453284 28 5.2
07_03_1107 - 24024387-24024497,24025799-24026410 28 6.9
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217... 28 6.9
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 6.9
11_01_0170 - 1373986-1374013,1374061-1374326,1374693-1374926,137... 27 9.1
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 27 9.1
02_05_0841 + 32129863-32130294,32130395-32130459,32130565-321307... 27 9.1
01_01_0626 - 4713943-4714515,4714645-4714853,4717310-4717628 27 9.1
>03_06_0614 -
35099225-35099461,35099545-35099694,35099919-35100066,
35100152-35100231,35100428-35100594,35100692-35100940,
35101025-35102310,35102423-35102544,35102946-35103272
Length = 921
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 319 PTKNGHAPPPTESRKSC*SVNPPVSGPGEI 230
P +NGH+ T SR+S S PP G GE+
Sbjct: 307 PERNGHSAASTSSRQSNDSTEPPTEGNGEL 336
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 29.9 bits (64), Expect = 1.7
Identities = 26/87 (29%), Positives = 36/87 (41%)
Frame = -3
Query: 334 RQIAPPTKNGHAPPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSIPLSFS 155
R AP K +P P+ R + S +P + +SR SN AA S+ LPS+ F
Sbjct: 80 RAPAPSPKPSPSPSPSPRRST--SASPSATLSSLVSRTFSNNAASSSSSKPLPSL---FR 134
Query: 154 FATILPPESKIFGFPEAARRAIVVTSA 74
P AA RA++ A
Sbjct: 135 GVRPSPKPGAALAAAAAASRAVLTPHA 161
>03_06_0189 + 32214702-32215154
Length = 150
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 208 AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 101
AA + P ALP +P + T LPP I P+AA
Sbjct: 30 AAAAAPPAALPVLPAVPALPTTLPPMPAIPAVPQAA 65
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 29.1 bits (62), Expect = 3.0
Identities = 30/86 (34%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = -3
Query: 322 PPTKNGHAPPPTESR-KSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFAT 146
PP APP R K C ++ PPV P E+S V A + A+P P S S
Sbjct: 86 PPAGVEDAPPRRSPREKPCPTMQPPVKPPEELSPV----GAPRSRVRAMPPSP-SLSPPA 140
Query: 145 ILPPES--KIFGFPEAARRAIVVTSA 74
P S K P A R A+ T A
Sbjct: 141 KAPSHSHAKTPSMPPAERPALPPTKA 166
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/63 (31%), Positives = 23/63 (36%)
Frame = -3
Query: 322 PPTKNGHAPPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATI 143
PPT GH P P +S PP ES+ P G +PS P S
Sbjct: 663 PPTPEGHTPSPPKS-------TPPTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPPVEK 715
Query: 142 LPP 134
PP
Sbjct: 716 SPP 718
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 325 APPTKNGHAPPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSIP 167
APPTK+ AP P + K+ + PP S P + V S + + +P+ P
Sbjct: 86 APPTKSTKAPAP--APKAAKATPPPASSPPVEAPVASPPSPAAEAPATIPTKP 136
>02_04_0451 +
23021139-23021269,23021366-23021498,23021594-23021789,
23023376-23023737,23024049-23024363
Length = 378
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3
Query: 301 APPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSF 152
APP T S ++ ++ PP S PG S + S G TP G + P F F
Sbjct: 326 APPRTFSSEN--AILPPES-PGTSSLMASRGDLGDTPKGKMEDKPRGFFF 372
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -3
Query: 319 PTKNGHAPPPTESRKSC*---SVNPPVSGPGEISRVESN*AAGSTPGGALPSIP 167
PT G P P+ S PP G++ S+ + +TPGG PS P
Sbjct: 305 PTPCGTPPAPSSGTSPTTPGGSYYPPTPSIGDVPPSPSSDTSPTTPGGGSPSTP 358
>11_01_0170 -
1373986-1374013,1374061-1374326,1374693-1374926,
1375034-1375171,1375255-1375557,1376008-1376172,
1376469-1376933
Length = 532
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 322 PPTKNGHAPPPTESRKSC*SVNPPVSGPGE 233
PP + APPP R SV P G GE
Sbjct: 22 PPARPRKAPPPCPRRSRSASVEPRARGIGE 51
>09_06_0076 + 20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = -2
Query: 227 PC*VKLSRRLHSWWCPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSNVGGSL 66
PC L R S W V++ Q C + P + +P PP S VGG L
Sbjct: 936 PCKTSLPRESASAWWTQVDTVSGQGCGESSPLCRPPAYPPE-PPVVLSLVGGQL 988
>02_05_0841 +
32129863-32130294,32130395-32130459,32130565-32130774,
32130943-32131024
Length = 262
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -3
Query: 241 PGEISRVESN*AAGSTPGGALPS-IPLSFSFAT--ILPPESKIFGFPEAARRA 92
PGE+S +ES+ A G LPS S AT +PP ++I F AA A
Sbjct: 176 PGEVSDLESDLAGGQKRSRPLPSAATASAQQATRPKIPPAAEIEAFFAAAEEA 228
>01_01_0626 - 4713943-4714515,4714645-4714853,4717310-4717628
Length = 366
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 337 TRQIAPPTKNGHAPPPTESRKSC*SVNPPVSGP 239
+ I P + PT +R+S VNPP++GP
Sbjct: 321 SNSIEPSALSLQLTGPTNTRQSAFHVNPPMAGP 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,810,209
Number of Sequences: 37544
Number of extensions: 448036
Number of successful extensions: 1267
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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