Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060351.seq
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)               34   0.081
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)                 33   0.14 
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)                 29   2.3  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   28   7.0  
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)                   28   7.0  

>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
          Length = 413

 Score = 34.3 bits (75), Expect = 0.081
 Identities = 27/88 (30%), Positives = 41/88 (46%)
 Frame = -3

Query: 334 RQIAPPTKNGHAPPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSIPLSFS 155
           +QI   T   + PP    + +     PP   PG  +  + N A G TPGG  PS+ +   
Sbjct: 130 QQIITTTTTNYPPPAMPYQGAQGPYQPPGYYPGYGAPPQGNYAGGYTPGGQ-PSMGMDNG 188

Query: 154 FATILPPESKIFGFPEAARRAIVVTSAD 71
            A+  PP S      E A +++V+ SA+
Sbjct: 189 GASYAPPPSYSECAQEPA-KSVVLPSAN 215


>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
          Length = 1736

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -2

Query: 527  ARVRPQASKASQTCYCSISCGSKTP--VPLRRILI 429
            ARV  + SK ++TC+C+  CGS+ P  +P   +++
Sbjct: 1083 ARVHTKLSKDTKTCFCAKRCGSEDPKNIPFNALIV 1117


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 1  ERKLEVRRRLDTALVLTVN 57
          ERKLE RRR DT LVLT+N
Sbjct: 25 ERKLEDRRRSDTVLVLTIN 43


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 1  ERKLEVRRRLDTALVLTVN 57
          ERKLE RRR DT LVLT+N
Sbjct: 25 ERKLEDRRRSDTVLVLTIN 43


>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 1  ERKLEVRRRLDTALVLTVN 57
          ERKLE RRR DT LVLT+N
Sbjct: 25 ERKLEDRRRSDTVLVLTIN 43


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 1  ERKLEVRRRLDTALVLTVN 57
          ERKLE RRR DT LVLT+N
Sbjct: 25 ERKLEDRRRSDTVLVLTIN 43


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 1  ERKLEVRRRLDTALVLTVN 57
          ERKLE RRR DT LVLT+N
Sbjct: 25 ERKLEDRRRSDTVLVLTIN 43


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 1  ERKLEVRRRLDTALVLTVN 57
          ERKLE RRR DT LVLT+N
Sbjct: 25 ERKLEDRRRSDTVLVLTIN 43


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 1  ERKLEVRRRLDTALVLTVN 57
          ERKLE RRR DT LVLT+N
Sbjct: 25 ERKLEDRRRSDTVLVLTIN 43


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 1   ERKLEVRRRLDTALVLTVN 57
           ERKLE RRR DT LVLT+N
Sbjct: 44  ERKLEDRRRSDTVLVLTIN 62


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 1  ERKLEVRRRLDTALVLTVN 57
          ERKLE RRR DT LVLT+N
Sbjct: 25 ERKLEDRRRSDTVLVLTIN 43


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 1  ERKLEVRRRLDTALVLTVN 57
          ERKLE RRR DT LVLT+N
Sbjct: 27 ERKLEDRRRSDTVLVLTIN 45


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 1  ERKLEVRRRLDTALVLTVN 57
          ERKLE RRR DT LVLT+N
Sbjct: 25 ERKLEDRRRSDTVLVLTIN 43


>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 784

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -1

Query: 315 LRTAMHHHPPNQERAVNLSILRCPGLVRFPVLSQIKPQ-APLLVVPFRQFL*VSALQPYS 139
           LR ++   P     A + +  +CPG V +P +    P+ AP    P R++     L   S
Sbjct: 326 LRPSLPIMPLELHTATSCASGKCPGCVYYPGMVPRSPRDAPK--EP-REYASPPPLPSKS 382

Query: 138 PRSPKSLVSRKLPAEPL 88
           PRSP++  SR  P E +
Sbjct: 383 PRSPRTSESRSPPREEM 399


>SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = +3

Query: 111 GKPKILDSGGSMVAKLKLKGIDGRAP------PGVEPAA*FDSTREISPGPDTGGLT 263
           G  K    GGSMV  L ++G  G  P      PG   AA   S    S GP TGG T
Sbjct: 58  GVAKYKPGGGSMVLSLIIQGAPGLMPGGAATTPGPSSAA-PTSAAPTSAGPTTGGQT 113


>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
          Length = 1197

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 253  PVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFAT 146
            P S PG  S      A  STPG A+ SIP + S +T
Sbjct: 1015 PSSTPGAASSTTPGAAPSSTPGAAMSSIPGATSSST 1050


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 152 CNHTPPGVQNLWFPGSCPPSHCSNVGGSLDD 60
           C+   PG  +   PGSC P +C N+ GSL D
Sbjct: 854 CDRCMPG--SYGGPGSCKPCNC-NMAGSLSD 881


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/71 (28%), Positives = 26/71 (36%)
 Frame = -3

Query: 322 PPTKNGHAPPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATI 143
           PP   G APPP  +R       PP   P   S+     + G+ P  ++   P     A  
Sbjct: 307 PPPSRGSAPPPPPARM---GTAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAP 363

Query: 142 LPPESKIFGFP 110
            PP     G P
Sbjct: 364 PPPPPPPVGGP 374


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 119 WFPGSCPPSHCSNVGGSLDDIFTVRTRAVS 30
           W+PG CPP  C+    +L +  TV +  +S
Sbjct: 80  WYPGYCPPHKCAG-RNTLQECCTVYSPEIS 108


>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 460

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 143 TPPGV-QNLWFPGSCPPSHCSNVGG 72
           +P GV +N W PGS   S+C++ GG
Sbjct: 174 SPYGVDENSWSPGSSQSSNCTSPGG 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,089,195
Number of Sequences: 59808
Number of extensions: 435524
Number of successful extensions: 1030
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)