Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060351.seq
(621 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical pr... 31 0.88
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 31 0.88
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 31 0.88
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 31 0.88
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 31 0.88
AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical ... 29 2.0
AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical ... 28 6.2
AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical ... 28 6.2
Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical p... 27 8.2
Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical p... 27 8.2
Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical p... 27 8.2
Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical p... 27 8.2
Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical p... 27 8.2
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 27 8.2
AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor tyro... 27 8.2
AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor tyro... 27 8.2
>Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical
protein F45E6.4 protein.
Length = 333
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 185 CPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSN 81
CP ++F F C G++ +FPG+CP CS+
Sbjct: 203 CPCQHAFAFPAC-----GMETGFFPGTCPEMTCSS 232
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 30.7 bits (66), Expect = 0.88
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -3
Query: 301 APPPTESRKSC*SVNPPVSGPGEISRVES-N*AAGSTPGGALPSIPLSFSFATILPPESK 125
A P++S V PP + R ES N A G + + ++P S +T +PP
Sbjct: 53 ASEPSDSVSRTARVPPPRLASATVRRTESFNSAPGVSTSAPMYTLPRS---STAVPPPDI 109
Query: 124 IFGFPEAARRAIVVTSAD 71
+ P +AR ++ +SAD
Sbjct: 110 LGSIPYSARDPLMRSSAD 127
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 30.7 bits (66), Expect = 0.88
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -3
Query: 301 APPPTESRKSC*SVNPPVSGPGEISRVES-N*AAGSTPGGALPSIPLSFSFATILPPESK 125
A P++S V PP + R ES N A G + + ++P S +T +PP
Sbjct: 251 ASEPSDSVSRTARVPPPRLASATVRRTESFNSAPGVSTSAPMYTLPRS---STAVPPPDI 307
Query: 124 IFGFPEAARRAIVVTSAD 71
+ P +AR ++ +SAD
Sbjct: 308 LGSIPYSARDPLMRSSAD 325
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 30.7 bits (66), Expect = 0.88
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -3
Query: 301 APPPTESRKSC*SVNPPVSGPGEISRVES-N*AAGSTPGGALPSIPLSFSFATILPPESK 125
A P++S V PP + R ES N A G + + ++P S +T +PP
Sbjct: 319 ASEPSDSVSRTARVPPPRLASATVRRTESFNSAPGVSTSAPMYTLPRS---STAVPPPDI 375
Query: 124 IFGFPEAARRAIVVTSAD 71
+ P +AR ++ +SAD
Sbjct: 376 LGSIPYSARDPLMRSSAD 393
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 30.7 bits (66), Expect = 0.88
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -3
Query: 301 APPPTESRKSC*SVNPPVSGPGEISRVES-N*AAGSTPGGALPSIPLSFSFATILPPESK 125
A P++S V PP + R ES N A G + + ++P S +T +PP
Sbjct: 251 ASEPSDSVSRTARVPPPRLASATVRRTESFNSAPGVSTSAPMYTLPRS---STAVPPPDI 307
Query: 124 IFGFPEAARRAIVVTSAD 71
+ P +AR ++ +SAD
Sbjct: 308 LGSIPYSARDPLMRSSAD 325
>AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical
protein Y32F6A.3 protein.
Length = 655
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 247 SGPGEISRVESN*AAGSTPGG-ALPSIPLSFSFATILPPESKIFGFPEAARRAI 89
S P + R S + +TP G A P PLS S + P+S G P + +R++
Sbjct: 521 STPRSVVRTTSTSSVPTTPTGLAAPKTPLSASVSATNEPDSTTNGTPLSRKRSM 574
>AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical
protein H34I24.2 protein.
Length = 458
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 325 APPTKNGHAPPPTESRKSC*SVNPPVSGPGEI 230
APPT + APPPT + C + N SGP ++
Sbjct: 252 APPTTST-APPPTTTPNPCLAFNCTGSGPCQL 282
>AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical
protein C34H4.2 protein.
Length = 449
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -3
Query: 337 TRQIAPPTKNGHAPPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGAL 179
T APP + PT + S SV+PP SGP +++ T G L
Sbjct: 375 TPSSAPPAPGSSSASPTGTSGS--SVSPPASGPTTSMPAQASTTPSGTMGSTL 425
>Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +3
Query: 108 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 245
S P +++S + KL G I GR PP VE + S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530
>Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +3
Query: 108 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 245
S P +++S + KL G I GR PP VE + S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556
>Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +3
Query: 108 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 245
S P +++S + KL G I GR PP VE + S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530
>Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +3
Query: 108 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 245
S P +++S + KL G I GR PP VE + S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556
>Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical
protein C01G6.8c protein.
Length = 769
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +3
Query: 108 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 245
S P +++S + KL G I GR PP VE + S + + P P
Sbjct: 348 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 397
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 187 HQEWSLRLNLTQHGKSHQARTP 252
H +W ++ NL +HG ++ A P
Sbjct: 696 HMDWHVKQNLARHGSNNSAAVP 717
>AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 902
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +3
Query: 108 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 245
S P +++S + KL G I GR PP VE + S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530
>AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 928
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +3
Query: 108 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 245
S P +++S + KL G I GR PP VE + S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,390,907
Number of Sequences: 27780
Number of extensions: 318922
Number of successful extensions: 909
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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